Query= MSMg01no260_b17.b1 MSMg01no260_b17.b1 CHROMAT_FILE:
MSMg01no260_b17.b1 PHD_FILE: MSMg01no260_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:06 2005
(504 letters)
>mm_chr19_6540180_6541083
Length = 904
Score = 969 bits (501), Expect = 0.0
Identities = 501/501 (100%)
Strand = Plus / Minus
Query: 4 ggaattcacttgctaacgctcctcatgtccatggccctcacatgggtcatgtgactttct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggaattcacttgctaacgctcctcatgtccatggccctcacatgggtcatgtgactttct 645
Query: 64 accttcctcctcactgggggcagggacaggagggcccttggtggcccagatctgtgttgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 accttcctcctcactgggggcagggacaggagggcccttggtggcccagatctgtgttgc 585
Query: 124 tggccaatggcatgtcttcctatgtgtaccacaggtttgggcgcagaagggtgctgacct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tggccaatggcatgtcttcctatgtgtaccacaggtttgggcgcagaagggtgctgacct 525
Query: 184 ggagctatcttctggtgtccgtgtccggcacagcagctgccttcatgcccaccttccccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggagctatcttctggtgtccgtgtccggcacagcagctgccttcatgcccaccttccccc 465
Query: 244 tctactgcctgtttcgtttcctgctggcctctgcagtggcaggtgtcatgatgaacacag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctactgcctgtttcgtttcctgctggcctctgcagtggcaggtgtcatgatgaacacag 405
Query: 304 ccagtctctgtatgtcccctgattggtgctgggtcgggaaggctgcatgcaggacccaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccagtctctgtatgtcccctgattggtgctgggtcgggaaggctgcatgcaggacccaga 345
Query: 364 attgacccctttcttgctccttgcagtgatggagtggacatcagcccagggtagcccttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attgacccctttcttgctccttgcagtgatggagtggacatcagcccagggtagcccttt 285
Query: 424 ggtgatgaccttgaacgccttgggcttcagctttgggcaggtcctgacaggttctgtggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggtgatgaccttgaacgccttgggcttcagctttgggcaggtcctgacaggttctgtggc 225
Query: 484 ctatggtgtgcgcagctggag 504
|||||||||||||||||||||
Sbjct: 224 ctatggtgtgcgcagctggag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_b17.g1 MSMg01no260_b17.g1 CHROMAT_FILE:
MSMg01no260_b17.g1 PHD_FILE: MSMg01no260_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:06 2005
(500 letters)
>mm_chr19_6432838_6433737
Length = 900
Score = 874 bits (452), Expect = 0.0
Identities = 494/522 (94%), Gaps = 22/522 (4%)
Strand = Plus / Plus
Query: 1 agaagagcttttagatgactttgatgttgtattcaccattgtggttaataaaatatacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagcttttagatgactttgatgttgtattcaccattgtggttaataaaatatacat 260
Query: 61 taggagaaatagttttagctttatagacaagatgtaccaatttgccttgagatatttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggagaaatagttttagctttatagacaagatgtaccaatttgccttgagatatttggt 320
Query: 121 atacatatggatttgtggatcttttggaatctaccctgtaatttcctgaggtcttggctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacatatggatttgtggatcttttggaatctaccctgtaatttcctgaggtcttggctt 380
Query: 181 acccagctcctgagaacccacatggcagaatatctgctgcttgcttcctctggggcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccagctcctgagaacccacatggcagaatatctgctgcttgcttcctctggggcatct 440
Query: 241 ggccacatgtaattgctgacagagctgaggatggctcgctgagcatcagtgtccctgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccacatgtaattgctgacagagctgaggatggctcgctgagcatcagtgtccctgctg 500
Query: 301 ctgactgggtgacaaggctggggtagcatagataagggttttgccatctgcacttcacca 360
||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 501 ctgactgggtgacaaggctggggtagcatagataaggattttgtcatctgtacttcacca 560
Query: 361 cccattctaacccacacatgtgtgtgcgtgtgtgcatatgtgcgtgtg------------ 408
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 cccattctaacccacacgtgtgtgtgcgtgtgtgcatatgtgcgtgtgtgtgtgtgtgtg 620
Query: 409 ----------agcaagaaaagtgatcgaggaagaaggggtgtgcaggtagatgtgggaga 458
|||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tgtgtaggagagcaagaaaagtaatcgaggaagaaggggtgtgcaggtaggtgtgggaga 680
Query: 459 caccagatggagtcaaggcgcagataccctgggccaagtgtc 500
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccagatggagtcaaggcgcagataccctgggccaagtgtc 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
