BAC Information

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BAC

Clone NameMSMg01-260I18
Chromosome19 (Build37)
Map Location 19,435,594 - 19,606,471
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260I18.T7 (MSMg01no260_i18.b1)MSMg01-260I18.TJ (MSMg01no260_i18.g1)
ACCAG403182AG403183
length754752
length of high quality
(start - end)		325 (46 - 370)469 (76 - 544)
definitionCHROMAT_FILE: MSMg01no260_i18.b1 PHD_FILE: MSMg01no260_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:40 2005CHROMAT_FILE: MSMg01no260_i18.g1 PHD_FILE: MSMg01no260_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,435,594 - 19,435,912)(19,606,003 - 19,606,471)
sequence
NTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTACTCTCTTGCCTCCTGCTTTGCTGCCTATTCCCTCATACCTC
TTCCTCCATGAGAGGTAGGCCTAGTACAAGCTGTCATTCTTTCTTAGTAC
TCTTTCTTTGCTCTGTTATTTCTGGGGTGGTTTCTACTCTTATTCCCTCT
CCCTCTAGTGTTAAGTCCTGAGGTTTTCTGAGACCTTGCATCACTTGTTA
GAGTTTTAGAAATAACGCTGTGTATATCCACATGGGAGTAGTGTAGGGGA
TATTTGAAGGCAGTGAATCCTTTTGATTTTCATTAAACTATGTCATGATT
TCTCCTCCTCTTTAATTAGGGGCTTGATTTCCAAAAGCAGATACCTTGGA
CTGCATGGGGTGAAAGAACCCACGCTTAGGCTATCAGTGCTTGTCAATGT
ACGTAGATACAAAAGGATACATATATATGTGTATATGTGTGTGTGCCTCT
GTGTGTGTGTGTGTGCATGTATGTTATCCACCCCAGAGATGATAGAGTTT
CTTAAACACATACTCCTCTTTATAACTATTGTCTCACCCAGCACGCTTAT
CTGATATAATTGTATAACCGCTATTTATGAGACATAACTGTCAATGCTCT
TGAACTTATTTTAAAGATGTCAACAATTCTTTCTGATTATTCATGATTTG
GCTTAATCTTCTATATGGGCCCCATTCTTCTGAATTTCTCCTGATTCTCT
ACAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGTCACACAGACTTAGAGGCCTT
TATTGTGATCCCTTGCCAGAACAGCCATGCTGCTGGATTTAAATTCTTCT
TCACATTCCCTCATTAGATTACCCATGTTCCAAACTTCACACCCATACAT
CATTAAGTAGACATAGAAGGTAATAAAAAATGAAGACATAAAATTGGAAA
GGTTGCTCAAAGGGGGGATGGAAGAAGTTAGAGGTACTAAATAAAGATGG
ATCTGTCACTCTTAAGTATGCACATACATGACATTTTTAAGAGCAGAAAT
TATTATTTTAGCCCTTTCCCCAACTCCTCCATTGGAGGTCTCATGCTCAG
TACAATTGTTGGCTGCAAGCATCTGTATCTGTATTGGTCAAGCAATACAG
GTTGGCAGAGTCTCTCAGGAGACAGCTATACCAGGCTTCTGTTAGCAAGC
ACTTCTTGGCATCAGCAATAGTGTCTGGGTTTAGTGGCTGCAGATGGGAT
GGATCCCCATGTGGGGCAGTCTCTAGATGCCCTTTCCTTCAGNTTCTGTT
CCACTCTTTTGTCACTTTATTTCCTTTTGCAAATCCACGTGGACTAACTA
CATACCCACGATCAGTAAAAATATTCCTCATCTATATAATAACTCCTTGG
CCACACACTCACCCCTGATCTTGTAGTTGAATTAACCATCAAACATTGAT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_i18.b1 MSMg01no260_i18.b1 CHROMAT_FILE:
MSMg01no260_i18.b1 PHD_FILE: MSMg01no260_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:40 2005
         (325 letters)



>mm_chr19_19435388_19436112
          Length = 725

 Score =  563 bits (291), Expect = e-165
 Identities = 312/319 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctactctcttgcctcctgctttgctgcctattccctcatacctcttcctccatga 66
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctactctccagcatcctgctttgctgcctattccctcatacctcttcctccatga 266

                                                                       
Query: 67  gaggtaggcctagtacaagctgtcattctttcttagtactctttctttgctctgttattt 126
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaggtaggcctagtaaaagctgttattctttcttagtactctttctttgctctgttattt 326

                                                                       
Query: 127 ctggggtggtttctactcttattccctctccctctagtgttaagtcctgaggttttctga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctggggtggtttctactcttattccctctccctctagtgttaagtcctgaggttttctga 386

                                                                       
Query: 187 gaccttgcatcacttgttagagttttagaaataacgctgtgtatatccacatgggagtag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaccttgcatcacttgttagagttttagaaataacgctgtgtatatccacatgggagtag 446

                                                                       
Query: 247 tgtaggggatatttgaaggcagtgaatccttttgattttcattaaactatgtcatgattt 306
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 447 tgtaggggatatttgaaggcagtgaatccttttgactttcattaaaccatgtcatgattt 506

                              
Query: 307 ctcctcctctttaattagg 325
           |||||||||||||||||||
Sbjct: 507 ctcctcctctttaattagg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_i18.g1 MSMg01no260_i18.g1 CHROMAT_FILE:
MSMg01no260_i18.g1 PHD_FILE: MSMg01no260_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:41 2005
         (469 letters)



>mm_chr19_19605913_19606781
          Length = 869

 Score =  876 bits (453), Expect = 0.0
 Identities = 465/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtcacacagacttagaggcctttattgtgatcccttgccagaacagccatgctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggtcacacagacttagaggcctttattgtgatcccttgccagaacagccatgctgctg 500

                                                                       
Query: 61  gatttaaattcttcttcacattccctcattagattacccatgttccaaacttcacaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gatttaaattcttcttcacattccctcattagattacccatgttccaaacttcacaccca 440

                                                                       
Query: 121 tacatcattaagtagacatagaaggtaataaaaaatgaagacataaaattggaaaggttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacatcattaagtagacatagaaggtaataaaaaatgaagacataaaattggaaaggttg 380

                                                                       
Query: 181 ctcaaaggggggatggaagaagttagaggtactaaataaagatggatctgtcactcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcaaaggggggatggaagaagttagaggtactaaataaagatggatctgtcactcttaa 320

                                                                       
Query: 241 gtatgcacatacatgacatttttaagagcagaaattattattttagccctttccccaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtatgcacatacatgacatttttaagagcagaaattattattttagccctttccccaact 260

                                                                       
Query: 301 cctccattggaggtctcatgctcagtacaattgttggctgcaagcatctgtatctgtatt 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 259 cctccattggaggtctcatgctcagtacaatggttggctgcaagcatctgtatctgtatt 200

                                                                       
Query: 361 ggtcaagcaatacaggttggcagagtctctcaggagacagctataccaggcttctgttag 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 199 ggtcaagcaatacaggttggcagagtttctcaggagacagctataccaggcttctgttag 140

                                                            
Query: 421 caagcacttcttggcatcagcaatagtgtctgggtttagtggctgcaga 469
           ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 139 caagcacttcttggcatcagcaatattgtctgggtttggtggctgcaga 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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