Query= MSMg01no260_k12.b1 MSMg01no260_k12.b1 CHROMAT_FILE:
MSMg01no260_k12.b1 PHD_FILE: MSMg01no260_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:49 2005
(289 letters)
>mm_chr19_24582954_24583640
Length = 687
Score = 505 bits (261), Expect = e-147
Identities = 282/289 (97%), Gaps = 2/289 (0%)
Strand = Plus / Plus
Query: 1 tggagaaagctgtaattatggagtaacagacgtgtcattgacacgtggacacggtttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 tggagaaagctgtaattatggagtaacagacgtgtcattgacacgtggaaa-ggtttgct 259
Query: 61 tgttacagtttatccaagggtattagttaaagagttcaaggagtttgcctgactgacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttacagtttatccaagggtattagttaaagagttcaaggagtttgcctgactgacagg 319
Query: 121 tgctccatcaagccaagtttccacagcccataggaccagtgatgggatgctctgagacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgctccatcaagccaagtttccacagcccataggaccagtgatgggatgctctgagacag 379
Query: 181 gaggagaaaccaaggaagggggctacatgtgtccgtctttttgtaactttttttatccca 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 380 gaggagaaaccaaggaagggggctacatgtgtccacctttttgtaactttttt-atccca 438
Query: 241 tttatttatttgtttgagaaacgtgtgccagtgtgtgcacgtgggaggt 289
|||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 tttatttatttgggtgagaaacgtgtgccagtgtgtgcacgtgggaggt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 687
Length adjustment: 9
Effective length of query: 280
Effective length of database: 678
Effective search space: 189840
Effective search space used: 189840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no260_k12.g1 MSMg01no260_k12.g1 CHROMAT_FILE:
MSMg01no260_k12.g1 PHD_FILE: MSMg01no260_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:49 2005
(535 letters)
>mm_chr19_24746966_24747901
Length = 936
Score = 833 bits (431), Expect = 0.0
Identities = 479/501 (95%), Gaps = 11/501 (2%)
Strand = Plus / Minus
Query: 46 tggcacctggtgtaataactgctgttcgaattctgctgccgaattttcccgttgttgggg 105
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 936 tggcacctggtgtaataactgctgtttgaattctgctgccaaattttcccgttgttgggg 877
Query: 106 tgcagatattgcaacccatcgtcccctctgactgacaggtgctagttaagtatttattct 165
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 876 tgcagatattgcaacccatcgtcccctctgactgacgggtgctagttaagtatttattct 817
Query: 166 gtgtgactttagtgcaggctaccattcctggttcattatatatgtttcacccaagtctct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtgtgactttagtgcaggctaccattcctggttcattatatatgtttcacccaagtctct 757
Query: 226 ccctgctctc----------aaaaaaaaaaaaataatccataggcatttgacctaagggc 275
|||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 756 ccctgctctcaaaaaaaaaaaaaaaaaaaaaaaaaatccataggcatttgacctaagggc 697
Query: 276 attgtcctcataacgctctagcatgatatagctatcatgtataccaagagagtacacatc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 attgtcctcataacgctctagcatgatatagctatcatgtataccaagagagtacacatc 637
Query: 336 ataaatcccccctattacaccccactctttgg-ccccacacggtctcacagggcacagtg 394
|||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 636 ataaatttctcctattacaccctactctttggcccccacacggtctcacagggcacagtg 577
Query: 395 gcagatgaaaggctgtaagaaaatctgaaaccttccccctaaaatatgtcttaggtaaaa 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acagatgaaaggctgtaagaaaatctgaaaccttccccctaaaatatgtcttaggtaaaa 517
Query: 455 tgtatcttagcagatgctgtcaaaccatgtcctttgccctctttccctgcgtctctgctc 514
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 516 tgtatcttagcagatgctgccaaaccatgtcccttgccctctttccctgcgtctctgctc 457
Query: 515 tgtgtcacattgccctaggaa 535
|||||||||||||||||||||
Sbjct: 456 tgtgtcacattgccctaggaa 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
