Query= MSMg01no261_a01.b1 MSMg01no261_a01.b1 CHROMAT_FILE:
MSMg01no261_a01.b1 PHD_FILE: MSMg01no261_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:17 2005
(673 letters)
>mm_chrX_89500498_89501570
Length = 1073
Score = 717 bits (371), Expect = 0.0
Identities = 386/391 (98%)
Strand = Plus / Minus
Query: 5 gaattctcaatcatgtgctgaaaggactttttttttctatttgtcatgaccatatttatt 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaattctcaatcatgcgttgaaaggactttttttttctatttgtcatgaccatatttatt 332
Query: 65 gtttataaaacagtttctttgttttttaatgtatacagtactaacatgataaaagttaaa 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtttataaaacagtttgtttgttttttaatgtatacagtactaacatgataaaagttaaa 272
Query: 125 tctctgatagtgtttcacagataggttatcagtgacctctggtttttacttacctgtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tctctgatagtgtttcacagataggttatcagtgacctctggtttttacttacctgtttt 212
Query: 185 tttttaatttatttattaatttttttattaggtattttccaaatttacatttccaatgct 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 211 tttttaatttatttattaatttttttattaggtattttccaaatttacatgtccaatgct 152
Query: 245 atcccaaaagtcacccacaccctccacccactcccctaccaacccactcccatttcttgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 atcccaaaagtcacccacaccctccacccactcccctaccaacccactcccatttcttgg 92
Query: 305 ccctggcattcctctatactgaggaatataatgtttgcacgaccaatgcgattctctttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ccctggcattcctctatactgaggaatataatgtttgcacgaccaatgcgattctctttc 32
Query: 365 cagtgatggctggctagaccatctcctaata 395
|||||||||| ||||||||||||||||||||
Sbjct: 31 cagtgatggccggctagaccatctcctaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_a01.g1 MSMg01no261_a01.g1 CHROMAT_FILE:
MSMg01no261_a01.g1 PHD_FILE: MSMg01no261_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:17 2005
(568 letters)
>mm_chr19_10166003_10166970
Length = 968
Score = 1036 bits (536), Expect = 0.0
Identities = 561/570 (98%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 1 ttttacataattccatgttatttttttcctcttgttgtttcatgtcatctaagcatattt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ttttacataattccatgctatttttttcctcttgttgtttcatgtcatctaagcatattt 862
Query: 61 tccatgctgcggtcattttctaggtgttagggaccaagctgggtgcctcacacatgccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tccatgctgcggtcattttctaggtgttagggaccaagctgggtgcctcacacatgccgg 802
Query: 121 gcaagtg--ttttttatcactgagttaaaccccttcactgagtctttatctcttccctga 178
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcaagtgttttttttatcactgagttaaaccccttcactgagtctttatctcttccctga 742
Query: 179 taattgtggccttgtggaagaggacatctctggggtggtaggtagtgtagtttgtgcgct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taattgtggccttgtggaagaggacatctctggggtggtaggtagtgtagtttgtgcgct 682
Query: 239 atgaaagacactcagctcaggagcaagacagggctgtcttctctgagtcctgtgcctatc 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaaagacactcagctcaggagcaggacagggctgtcttctctgagtcctgtgcctatc 622
Query: 299 tgctctccctggagacccctctgtccacaaacccttgaccagctcagtaggcctggcgcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctctccctggagacccctctgtccacaaacccttgaccagctcagtaggcctggcgcc 562
Query: 359 agtacagaggctcagggtggttaccatttgctgctggagtcctgcactaggaatgtgtcc 418
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 561 agtacagaggctcagggtggttaccgtttgctgctggagtcctgcactaggaatatgtcc 502
Query: 419 tggggtggagtctggagtaagcatttgccactgggtggtgggaagccccacttggtgtct 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 tggggtggagtctggagtaagcatttgccactgggtggtgggaagccccacttgctgtct 442
Query: 479 gagcagaggctagagctgctgctaaatgccctctctcctagaatgggagaaaccagcaga 538
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gagcagagactagagctgctgctaaatgccctctcccctagaatgggagaaaccagcaga 382
Query: 539 ggtttgaggttcagccttacaaactgcttc 568
||||||||||||||||||||||||||||||
Sbjct: 381 ggtttgaggttcagccttacaaactgcttc 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
