Query= MSMg01no261_k21.b1 MSMg01no261_k21.b1 CHROMAT_FILE:
MSMg01no261_k21.b1 PHD_FILE: MSMg01no261_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:07 2005
(469 letters)
>mm_chr19_22084947_22085815
Length = 869
Score = 876 bits (453), Expect = 0.0
Identities = 465/469 (99%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 1 cacaacttatctatcaggcagcaattcccctgttgggttttgttatgctttgggctgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaacttatctatcaggcagcaattcccctgttgggttttgttatgctttgggctgcca 260
Query: 61 ttcaaagaaaaatgttcttctattaggagtaaaatgaaataaatagcctttgaggtctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaagaaaaatgttcttctattaggagtaaaatgaaataaatagcctttgaggtctta 320
Query: 121 agaagcactgatgcaaaggtaaactttgagaaggggttctaatgaaatgatatggagcta 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agaagcactgatgcaaaggtaaactttgagaaggggttctaaggaaatgatatggagcta 380
Query: 181 tgctgcatgtggggcactgggctgccagaaaatggtatgaaaggaattcctggggcataa 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgcatgtggggcgctgggctgccagaaaatggtatgaaaggaattcctggggcataa 440
Query: 241 aatgctagtgactatgaccacagcattagaaaatcagtaattccttagcactttagttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgctagtgactatgaccacagcattagaaaatcagtaattccttagcactttagttcc 500
Query: 301 aattgtaacacttagcatggaggcacgtaattgcaagttcaagggcaaactgccctatat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aattgtaacacttagcatggaggcacgtaattgcaagttcaagggcaaactggcctatat 560
Query: 361 aatgagaccttctctcaaaaaaaaaagaatagcaaattaaaaatggtaaacacaagttac 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgagaccttctctcaaaaaaaaa-gaatagcaaattaaaaatggtaaacacaagttac 619
Query: 421 acatttcagtaaggctaaagatccttctgcttgcagaagataattagta 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acatttcagtaaggctaaagatccttctgcttgcagaagataattagta 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_k21.g1 MSMg01no261_k21.g1 CHROMAT_FILE:
MSMg01no261_k21.g1 PHD_FILE: MSMg01no261_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:07 2005
(454 letters)
>mm_chr19_22236699_22237555
Length = 857
Score = 692 bits (358), Expect = 0.0
Identities = 431/462 (93%), Gaps = 17/462 (3%)
Strand = Plus / Minus
Query: 1 caagcagtctcagcagattcatggtgcaatgatttttttttaaccaaacttaaatttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caagcagtctcagcagattcatggtgcaatgatttttttttaaccaaacttaaatttctt 596
Query: 61 tccaaaccatatggggg-aaaatctgaaaaagatttggagagtatgttcaacaaaactta 119
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 595 tccaaaccatatgggggaaaaatctgaaaaagatttggaaagtatgttcaacaaaactta 536
Query: 120 cttggggggtggggagtagagaacagtagaaaatactgagtttctgttattactttgtat 179
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 535 cttggggggtggggagtggagaacagtagaaaatattgagtttctgttattactttgtat 476
Query: 180 agtggggaacacattttaaaagtaattgtagaatattaagacaaagccttttatttttt- 238
|| || ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 475 ggtaggaaacacattttaaaagtaattgtagaatattaagacaaagcctttt--tttttc 418
Query: 239 -tctttagttgtgatctattatcagacagtaaggctgggaatttattctaattttttt-c 296
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct: 417 ctctttagttgtgatctattagcagacagtaaggctggggatttattctaattttttttc 358
Query: 297 agcactggtgattgactgcaggtccttatgcattctgggaaagggctccacactgacccc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agcactggtgattgactgcaggtccttatgcattctgggaaagggctccacactga---- 302
Query: 357 c-----accctcagctcctaatatttttatttcataagtgaaaaaagaaataatctggat 411
|||||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 301 -ggtagaccctcagctcctaatatttttatttcacaagtaaaaaaagaaatgatctggat 243
Query: 412 acctcatcttcagtgtcaaaagtcattt-gaggcttttaggc 452
| ||||||| |||||||||||||||||| | |||||||||||
Sbjct: 242 atctcatctgcagtgtcaaaagtcattttggggcttttaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 857
Length adjustment: 10
Effective length of query: 444
Effective length of database: 847
Effective search space: 376068
Effective search space used: 376068
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
