Query= MSMg01no262_i19.b1 MSMg01no262_i19.b1 CHROMAT_FILE:
MSMg01no262_i19.b1 PHD_FILE: MSMg01no262_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:13 2005
(257 letters)
>mm_chr19_59224418_59225074
Length = 657
Score = 476 bits (246), Expect = e-139
Identities = 255/258 (98%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 1 tgctgtctcttaagagtctgttctgaagctgtggtgaaagccggggtgtgatagcatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgctgtctcttaagagtctgttctgaagctgtggtgaaagccggggtgtgatagcatttt 398
Query: 61 gcaaatcttaaacaggtgccaag-cctccatcgtcacccgtgggactctcagcttcatgt 119
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct: 397 gcaaatcttaaacaggtgccaagccct-catcatcacccgtgggactctcagcttcatgt 339
Query: 120 tgcaggtcaggtgctctgttggcaggaggaggaaaagactttaggatacaatatcagctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgcaggtcaggtgctctgttggcaggaggaggaaaagactttaggatacaatatcagctt 279
Query: 180 ctgtggatcacagaataaaagctataaagtaccagagaactgtgctggaccagtctgtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctgtggatcacagaataaaagctataaagtaccagagaactgtgctggaccagtctgtga 219
Query: 240 tttgattgacagtggcat 257
||||||||||||||||||
Sbjct: 218 tttgattgacagtggcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no262_i19.g1 MSMg01no262_i19.g1 CHROMAT_FILE:
MSMg01no262_i19.g1 PHD_FILE: MSMg01no262_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:14 2005
(520 letters)
>mm_chr19_59073877_59074796
Length = 920
Score = 932 bits (482), Expect = 0.0
Identities = 506/518 (97%), Gaps = 9/518 (1%)
Strand = Plus / Plus
Query: 8 ctctctcacaagggcagagccttgagcttcctgctacactggtgggactggggtactctt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctctctcacaagggcagagccttgagcttcctgctacactggtgggactggggtactctt 267
Query: 68 atagcaaacaaggacttgctgagtgtgtggccactcttgtagaacacggtcaacaacaag 127
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 268 atagcaaacaaggacttgctgagtgtgtggccactcttgtagaacacagtcaacaacaag 327
Query: 128 gcatttgactgtgctgggcaaagaatccctatggctctcttagttccagaaaggctggcc 187
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcatttgtctgtgctgggcaaagaatccctatggctctcttagttccagaaaggctggcc 387
Query: 188 accaatggctggaggtagccaaggtgcaaagaaacgagcctaagagtggacataaaacac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 accaatggctggaggtagccaaggtgcaaagaaacgagcctaagagtggacataaaacac 447
Query: 248 acccccaaaacaagtactcatgaaaagtcagagtaacacgggcagcggctcttacttacc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acccccaaaacaagtactcatgaaaagtcagagtaacacgggcagcggctcttacttacc 507
Query: 308 aggattcccttcagctcatccaccgcactttctgagcccttgagagagtctggctgtaat 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggattcccttcagctcatccaccgcactttctgagcccttgagagagtctggctgtaat 567
Query: 368 tcaaaaggagaaagaaaaaattactgtgtgatttgatttgaaaatttgaaattttttttt 427
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 568 tcaaaaggagaaagaaaaaattactgtgtgatttgatttgaaaatttgaatttttttttt 627
Query: 428 tttttttt-----atgaatgaagtgtgtgtggcgggagagaacaacatacatgcaagatt 482
|||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 628 ttttttttttttaatgaatgaagtgtgtgtggcgggagagaacaac---c-tgcaagatt 683
Query: 483 tttctcccgccacgggggtcccaggaatggatcactag 520
||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttctcccgccacgggggtcccaggaatggatcactag 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
