Query= MSMg01no263_i11.b1 MSMg01no263_i11.b1 CHROMAT_FILE:
MSMg01no263_i11.b1 PHD_FILE: MSMg01no263_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:28 2005
(275 letters)
>mm_chr19_10540697_10541371
Length = 675
Score = 485 bits (251), Expect = e-142
Identities = 266/271 (98%)
Strand = Plus / Minus
Query: 5 gaattcaagtacgatttacatgtgggatgccatcactaacaaagggatgggcattgtgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattcaagtacgatttacatgtgggatgccatcactaacaaagggatgggcattgtgat 416
Query: 65 gccttctgtgtgcctccagcagcacccagctgctggtgtggggctggaaggatcttctgg 124
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gccttctgtgggcctggagcagcacccagctgctggtgtggggctggaaggatcttctgg 356
Query: 125 gagacacaaaagctatgcacagagtgactcacctgactctaggctcctgcacagacaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gagacacaaaagctatgcacagagtgactcacctgactctaggctcctgcacagacaggc 296
Query: 185 atagtaaggtgagtgcaacttcaaaggatcctcagtggctgatagctgcatccttccccg 244
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 295 atagtaaggtgagtgcaacttcaaaggatcctcagaggctgaaagctgcatccttccccg 236
Query: 245 ggctcaatggtgtggatctacagataacata 275
|||||||||||||||||||||||||||||||
Sbjct: 235 ggctcaatggtgtggatctacagataacata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no263_i11.g1 MSMg01no263_i11.g1 CHROMAT_FILE:
MSMg01no263_i11.g1 PHD_FILE: MSMg01no263_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:28 2005
(601 letters)
>mm_chr19_10380330_10381324
Length = 995
Score = 1004 bits (519), Expect = 0.0
Identities = 564/601 (93%), Gaps = 36/601 (5%)
Strand = Plus / Plus
Query: 1 ctggagaggagctcctgatgtctcaggaagttcagaaatctggggaggcctgggttacag 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggagaggagctcccgatgtctcaggaagttcagaaatctggggaggcctgggtt---- 256
Query: 61 ttcagggacgttatctctagattgtcatggtccattcaaaccacacagttggagataata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 --cagggacgttatctctagattgtcatggtccattcaaaccacacagttggagataata 314
Query: 121 tctcttgcttcaaagtcccagacacctggaagaaagaattatattggtcctgtgaaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctcttgcttcaaagtcccagacacctggaagaaagaattatattggtcctgtgaaccat 374
Query: 181 ggtagatcaactgatgccaggcagaaaggactctgcaaaatcagctcttttccttactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtagatcaactgatgccaggcagaaaggactctgcaaaatcagctcttttccttactca 434
Query: 241 ccaaagttcctaatggagaaagcatgcccacgtggccatccctaaatagtctactacagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccaaagttcctaatggagaaagcatgcccacgtggccatccctaaatagtctactacagt 494
Query: 301 ctaccccttagctgtccggcacatagaaaactacacaagttccacacacacacacacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctaccccttagctgtccggcacatagaaaactacacaagttccacacacacacacacaca 554
Query: 361 cacacacacacacacacacacacacacacactcgcacacacactcacacacacactcaca 420
||||||||||| ||||||||||||||||||||||||
Sbjct: 555 cacacacacac--------------------tcgcacacacactcacacacacac----- 589
Query: 421 cacacacacaccatcatcatcaccaccatcaccatcatcatcatccccatgtatccaatc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 -----acacaccatcatcatcaccaccatcaccatcatcatcatccccatgtatccaatc 644
Query: 481 ctcgacaaaccagttctgaccagttctataatgtgggaggctaatactactgggattctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctcgacaaaccagttctgaccagttctataatgtgggaggctaatactactgggattctc 704
Query: 541 aaggtgatgtcctgttcttggtcagctgcatcagtgagccccatgtagggcatcccacac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aaggtgatgtcctgttcttggtcagctgcatcagtgagccccatgtagggcatcccacac 764
Query: 601 c 601
|
Sbjct: 765 c 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 995
Length adjustment: 10
Effective length of query: 591
Effective length of database: 985
Effective search space: 582135
Effective search space used: 582135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
