Query= MSMg01no263_n10.b1 MSMg01no263_n10.b1 CHROMAT_FILE:
MSMg01no263_n10.b1 PHD_FILE: MSMg01no263_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:52 2005
(362 letters)
>mm_chr19_25773553_25774315
Length = 763
Score = 596 bits (308), Expect = e-175
Identities = 331/342 (96%), Gaps = 7/342 (2%)
Strand = Plus / Plus
Query: 25 ctttagagggctcttgagaaggagtgagaaaataatgtatgaagaatgtttagtatagtg 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ctttagagggctcttgagaaggagtgagaaaataatgtatgaagaatgtttagtatagtg 284
Query: 85 cttccatgtcttgaaaaacagtagaactcattatggctttacacgaaactggtattgatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cttccatgtcttgaaaaacagtagaactcattatggctttacacgaaactggtattgatt 344
Query: 145 aagtggccatggacaaatgagactcaaaagctgtaaggacttttggaaccaagtgcaaat 204
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aagtggccatgaacaaatgagactcaaaagctgtaaggacttttggaaccaagtgcaaat 404
Query: 205 ggtctttgagatggactgtggtttttcagcatgcttgcatgttccagacttagctcaacc 264
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggtctttgagatggacggtggtttttcagcatgcttgcatgttccagacttagctcaacc 464
Query: 265 ctccttttattt----accacactactactagactccagtgcagcaagtacagcgacgta 320
||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 465 ctcctttta---ggaaaccacactactactagactccagtgcagcaagtacagctacgta 521
Query: 321 aggcgtttcccatacctgccgaagtgcctgccactcaaactt 362
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aggtgtttcccatacctgccgaagtgcctgccactcaaactt 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space: 266162
Effective search space used: 266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_n10.g1 MSMg01no263_n10.g1 CHROMAT_FILE:
MSMg01no263_n10.g1 PHD_FILE: MSMg01no263_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:52 2005
(594 letters)
>mm_chr19_25933866_25934862
Length = 997
Score = 971 bits (502), Expect = 0.0
Identities = 573/598 (95%), Gaps = 5/598 (0%)
Strand = Plus / Minus
Query: 1 atccctcgctaatgagcgctagcttttggtctaagtgatacactagaggaaggtcagact 60
|||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 797 atccctcgctgatgagcactagcttttggtccaagtgatacactagaggaaggtcagatt 738
Query: 61 tcttccctgaaagacccacctcatgcttaccatgctattatcagacagttaaagtcgaca 120
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 737 tcttccctaaaagacccacctcatgcttatcatgctattatcagacagttaaagtcgaca 678
Query: 121 cagatggggcaccacaatgactcaaccatgtccctccctgtcccttgacacagcagcaga 180
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagatggagcaccccaatgactcaaccatgtccctccctgtcccttgacacagcagcaga 618
Query: 181 tctgcttccttacaatgaccttgttacttatgctgaccaataggctcactctttttatcc 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 617 tctgcttccttacaatgaccttg-tatttatgctgaccaataggctcactctttttatcc 559
Query: 241 cagctctattgcttcatgaaggatccaaagcgatcagccacaaaatatagctttgaaggt 300
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagttctattgcttcatgaagaatccaaagcgatcagccacaaaatatagctttgaaggt 499
Query: 301 agtgtgactcctactttgatcctcatggaagtccctgctctgccctggaatcagagccca 360
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 498 agtgtgactcctactctgatcctcatggaaatccctgctctgccctggaatcagagccca 439
Query: 361 taggaccacagaaccaaaaacttcagagacaaaaagaaaatcttccaaaggattacctag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tagggccacagaaccaaaaacttcagagacaaaaagaaaatcttccaaaggattacctag 379
Query: 421 agtgaagggaagcagcttccctcctattcccat---cccctgatttggagacctatgtat 477
|||||||||||||||||||||||||||| |||| | |||||||||||||||| |||||
Sbjct: 378 agtgaagggaagcagcttccctcctatttccatgatctcctgatttggagacctgtgtat 319
Query: 478 tctacccaatggtcacaggtctaaaatgtgtatcatacactgaagaag-cgtactctttc 536
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 318 tctacccaatggtcacaggtctaaaatgtgtatcatatactgaagaattcgtactctttc 259
Query: 537 ctcttagattagtagctacaagctggagccttggggtaggcctgggtggaatttgtgc 594
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 ctcttagattagtagctacaagctggagccttggtgtaggcctgggtggaatttgtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 997
Length adjustment: 10
Effective length of query: 584
Effective length of database: 987
Effective search space: 576408
Effective search space used: 576408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
