BAC Information

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BAC

Clone NameMSMg01-264C11
Chromosome19 (Build37)
Map Location 57,907,107 - 58,061,221
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneTdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C11.T7 (MSMg01no264_c11.b1)MSMg01-264C11.TJ (MSMg01no264_c11.g1)
ACCAG405780AG405781
length710831
length of high quality
(start - end)
279 (432 - 710)288 (127 - 414)
definitionCHROMAT_FILE: MSMg01no264_c11.b1 PHD_FILE: MSMg01no264_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:15 2005CHROMAT_FILE: MSMg01no264_c11.g1 PHD_FILE: MSMg01no264_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,907,107 - 57,907,385)(58,060,934 - 58,061,221)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGCTTTCCCCCCTACACCTGTTTCAAGTGTGCAGTTAATGGTGTAC
GGGATGTTCACTTTGGTCCACAGCTCCACACCTATCACCACAGTTGAGGA
TGTGTTCGGCAAAGGAAGCCCCAGTCCCTCGGCCATCCCGCTCATGGCCG
TGCTGGTACCCACCCAAGTTCTAGTCTCTCCCACCTGTCTCTACAGTCAC
CTCTCCAGACATTGCCTTTGCTCAAGTCCTGCACCACGTGGTCATTTTTT
GGCTCACATCTTTCTCNTGGCACATATTTTCAACATTCACCAAATTACGG
TCTGGATTATTACCCCCCTTCTTCCCCCTTGNTGAATATATTAAATGTGN
TATTTTAAAATCTCAGAAACGCATGTAAACAAACAGTATGAGAGCCAATT
TTGAAGTAAGAACTTGTTCAGAACGTAGCTGCTTTTCTGTTTGCTTCTGA
GTGCCATCAGCCAGGTGTCCCAGTATTGATCTGCATCTGCCTTCTCTCCT
AGATCTGTTGATTTAGCTCGCTCTCTAATTATGGATATCTTGAGTTCATC
ATTTGATATCTTATCCTGAGACATTTAGCTAAATGGTTTGGAAGGGAAAC
TTAATTTACTGACTAAATCAAAAGTTGTGTGGACGCACAGAGATTACGAT
GTGTTTTCTC
TTTTATTTTTTTCCAACAAAACAAATATAGTTTTATATTTNTTTTNNNCT
CCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGGGCAAGAAAGGAAGGGCT
ACCACTCTGAGAATTAGCCGCATCCCGCGAGAACGACTAAGGCTATGAGC
ATCCAGCTTAGTAGCCTGACTGGGAAGCCTGTGAACTGATGCTGCAAACC
TCTGTTCTCCAGAGCTGAGTGAGCGCAATGGGTTCACGGCCTTCCTTATC
GCCCTTTCCTTATAGCATGACCTTCGCTTACAATCGAGGCACAAGCCTGG
TGATGATTACAAAGGCACCCCCAACTCATTAGCATCTGACACACTGGCTT
TGCCAGGCTGGCAACGTTTTTTGGCCACGCCCCGCACATCAGTTCACAGA
ATCAGTTAACAAAACTCGACCTCATTGACTTGAATAAGGACTAGCTTGAA
CAAAAACAAAGATTATTTAACCACAGCCACTGTCAGGCAGACATGGTACT
CTTAAGAACAATAACAAAATGAAAAACCAGTGTTTTACTGTTTCTGATCT
CATCTTGGCAATGTTGCCATCTCCTGAGGGACTTGGTGGCCCGATTTCTC
AAGATGTAGCCATCAGTATATCTGTCAGTGTCAAGGGGTTTTGCATTTTT
ATAAACACAGCTTGGAATATAAGTGGAAGGATTATGAAGGAGCACAGGAG
GGACGGAATGAAATTATACCATCACCCATAGGCAACTTTATCACTTAGAC
GGTTGACAAAAGAAACCCTGAAGGGAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c11.b1 MSMg01no264_c11.b1 CHROMAT_FILE:
MSMg01no264_c11.b1 PHD_FILE: MSMg01no264_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:15 2005
         (279 letters)



>mm_chr19_57906907_57907585
          Length = 679

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagtatgagagccaattttgaagtaagaacttgttcagaacgtagctgcttttctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagtatgagagccaattttgaagtaagaacttgttcagaacgtagctgcttttctgtt 260

                                                                       
Query: 61  tgcttctgagtgccatcagccaggtgtcccagtattgatctgcatctgccttctctccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttctgagtgccatcagccaggtgtcccagtattgatctgcatctgccttctctccta 320

                                                                       
Query: 121 gatctgttgatttagctcgctctctaattatggatatcttgagttcatcatttgatatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatctgttgatttagctcgctctctaattatggatatcttgagttcatcatttgatatct 380

                                                                       
Query: 181 tatcctgagacatttagctaaatggtttggaagggaaacttaatttactgactaaatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcctgagacatttagctaaatggtttggaagggaaacttaatttactgactaaatcaa 440

                                                  
Query: 241 aagttgtgtggacgcacagagattacgatgtgttttctc 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagttgtgtggacgcacagagattacgatgtgttttctc 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no264_c11.g1 MSMg01no264_c11.g1 CHROMAT_FILE:
MSMg01no264_c11.g1 PHD_FILE: MSMg01no264_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:16 2005
         (288 letters)



>mm_chr19_58060734_58061421
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagggcaagaaaggaagggctaccactctgagaattagccgcatcccgcgagaacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct: 488 tctaagggcaagaaaggaagggctaccactctgagaattagccgcatccagtgagaatga 429

                                                                       
Query: 61  ctaaggctatgagcatccagcttagtagcctgactgggaagcctgtgaactgatgctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctaaggctatgagcatccagcttagtagcctgactgggaagcctgtgaactgatgctgca 369

                                                                       
Query: 121 aacctctgttctccagagctgagtgagcgcaatgggttcacggccttccttatcgccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aacctctgttctccagagctgagtgagcgcaatgggttcacggccttccttatcgccctt 309

                                                                       
Query: 181 tccttatagcatgaccttcgcttacaatcgaggcacaagcctggtgatgattacaaaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccttatagcatgaccttcgcttacaatcgaggcacaagcctggtgatgattacaaaggc 249

                                                           
Query: 241 acccccaactcattagcatctgacacactggctttgccaggctggcaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acccccaactcattagcatctgacacactggctttgccaggctggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)