BAC Information

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BAC

Clone NameMSMg01-264O05
Chromosome19 (Build37)
Map Location 55,463,529 - 55,620,130
singlet/doubletdoublet
Overlap geneVti1a, LOC100043479
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264O05.T7 (MSMg01no264_o05.b1)MSMg01-264O05.TJ (MSMg01no264_o05.g1)
ACCAG406309AG406310
length731756
length of high quality
(start - end)
356 (376 - 731)194 (111 - 304)
definitionCHROMAT_FILE: MSMg01no264_o05.b1 PHD_FILE: MSMg01no264_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:12 2005CHROMAT_FILE: MSMg01no264_o05.g1 PHD_FILE: MSMg01no264_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,463,529 - 55,463,878)(55,619,937 - 55,620,130)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCGCGGA
ATTCTTCATATTTCAAGTAAAAATCATATCCCCATATCCTGTGTTATATA
TTATTGCTTGGTTATTTCTCTTATTTTCCTTTGTCAGCAGTTGTACCAAT
TTCAGTGCCGTAGTTGATGTTTCTGAGGCTGTACTGTGATAGAATTATTG
GTGGTAGAATGATAATTTCAGGAATTGTATTGTCCGTGTCTTTGATTTGG
GTGTAACACTAATATTTATGGATTTGGTGATGCAACCGAGCTTGCAAGCA
GATGGCTCCGAATGTTTTTTCTCCCAGTCAGGGTCTGTTCGTACTCATAC
GGTGAATGTGTACCTCACTTTTTCACTTGCACTTCTTTTAAAAAGACAAG
AACCTATCTATTCAAGGACACAGTGTTTGTTGTATTTGGAAATTCACTGT
GCCCGTCCTTCCTCGGAATGCTCTCTTCAGGGTATGTTAGAGGCAGGGCT
GTAGCGCAGAGGGAGCTGTGCCGAGCTGTTGGAATCCTGCAGCCCGTCTT
TCTACTTTGCCCAGCTCCTCACACAAGCTGAGCCCCGTCAGAAGCTCCTG
TGCAGCTTCACTCACCTCCTTTGAAGAGGGCCAAGAAGAGGGTGAGAGAA
GGAGTTTGGGATGGAGAGTGGGGCAGTCTGAAAGCCTGTGCGCCTCTGTC
GTGGATCGCCTTTCATTTAAAGGACGACGGN
TGGAGGACGCCTGGTTTCGTACCGGAGGNNGAACTATAGAAGGTTTCGAG
AAATTCCAGCACTGTTGCAAGACGGCACGGTGTGCAGATACCACCTGCTG
ACTCGCGACCAGGAAAGATAAAGAGTAGCAGTCCCAGAACAAGGCCTGGT
CTAGAGTCTTCTGTTCACTACGTAGGCGGCCTTGGTCAGATTTGCTTACC
CCAGGTTCCCACACATACAAGGAGAGAAGCAGGATATTTTACATGGTATC
TATTAAAACAAAACAACACGCGTCAAGCTCCCAGCAGGATATTTTGTTCA
TTTGTTTGTATTGGTATTTTAACCAGTGTGGTTTTTAAAAAATTAGTGTT
TATCTCTTCGACCACCTACATTGTCTTCTAAAACAGTGGGCTTCACCTAC
ATGGAGACAGCGTTCCAGTCAGCGTCAGTTCTGCATGGGACCCACGTACA
CCTCCTCTTAGGCTTTCCTGTCTTTCTGTACGTAGGCTCTCTGGTCTCAG
CCTCATTGTGCTGCCCAGGCTGCCTGCCTCTCAGTGCGTAACCTTCCTGC
CTCTGCGGCCAGCTGCTGGGATTACAGGTATATGTCCTTGTGTTTGGCCA
GATTAGCCAATCTTTCACCGTGTGTGATTCCAGACCACTAGTTACCCTTT
TTACTAAACAAAATTGGCAAAAATAAAGCTTTTAGAAGTAAATTGGTATC
TTGGGAACAAATTTGGTTAATTCCTGGAATTCCCCAAAAGTTTTCTACTG
GGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_o05.b1 MSMg01no264_o05.b1 CHROMAT_FILE:
MSMg01no264_o05.b1 PHD_FILE: MSMg01no264_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:12 2005
         (356 letters)



>mm_chr19_55463329_55464084
          Length = 756

 Score =  677 bits (350), Expect = 0.0
 Identities = 350/350 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgcacttcttttaaaaagacaagaacctatctattcaaggacacagtgtttgttgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgcacttcttttaaaaagacaagaacctatctattcaaggacacagtgtttgttgtat 260

                                                                       
Query: 61  ttggaaattcactgtgcccgtccttcctcggaatgctctcttcagggtatgttagaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaaattcactgtgcccgtccttcctcggaatgctctcttcagggtatgttagaggca 320

                                                                       
Query: 121 gggctgtagcgcagagggagctgtgccgagctgttggaatcctgcagcccgtctttctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctgtagcgcagagggagctgtgccgagctgttggaatcctgcagcccgtctttctac 380

                                                                       
Query: 181 tttgcccagctcctcacacaagctgagccccgtcagaagctcctgtgcagcttcactcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcccagctcctcacacaagctgagccccgtcagaagctcctgtgcagcttcactcac 440

                                                                       
Query: 241 ctcctttgaagagggccaagaagagggtgagagaaggagtttgggatggagagtggggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctttgaagagggccaagaagagggtgagagaaggagtttgggatggagagtggggca 500

                                                             
Query: 301 gtctgaaagcctgtgcgcctctgtcgtggatcgcctttcatttaaaggac 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgaaagcctgtgcgcctctgtcgtggatcgcctttcatttaaaggac 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_o05.g1 MSMg01no264_o05.g1 CHROMAT_FILE:
MSMg01no264_o05.g1 PHD_FILE: MSMg01no264_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:12 2005
         (194 letters)



>mm_chr19_55619737_55620330
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaagataaagagtagcagtcccagaacaaggcctggtctagagtcttctgttcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aggaaagataaagagtagcagtcccagaacaaggcctggtctagagtcttctgttcacta 335

                                                                       
Query: 61  cgtaggcggccttggtcagatttgcttaccccaggttcccacacatacaaggagagaagc 120
           ||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 334 cgtaggcggccttggtcagatttgcttaccccaggttcccatacacacgaggagagaagc 275

                                                                       
Query: 121 aggatattttacatggtatctattaaaacaaaacaacacgcgtcaagctcccagcaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aggatattttacatggtatctattaaaacaaaacaacacgcgtcaagctcccagcaggat 215

                         
Query: 181 attttgttcatttg 194
           ||||||||||||||
Sbjct: 214 attttgttcatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)