BAC Information

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BAC

Clone NameMSMg01-265B11
Chromosome19 (Build37)
Map Location 11,012,414 - 11,012,726
singlet/doubletsinglet
Overlap geneGpr44
Upstream geneFth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1
Downstream geneCcdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265B11.T7 (MSMg01no265_b11.b1)MSMg01-265B11.TJ (MSMg01no265_b11.g1)
ACCAG406454AG406455
length740772
length of high quality
(start - end)
334 (9 - 342)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no265_b11.b1 PHD_FILE: MSMg01no265_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:28 2005CHROMAT_FILE: MSMg01no265_b11.g1 PHD_FILE: MSMg01no265_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGGGAGAGGATCCGCGGAATTCATAGAGCTCAAAGATGTCA
GATGTGCCTGCTCCCTTTGACCTAGCTCCAATAGGTATTCTGTCAGGGAT
CTTCTAGGTTGGGGTCCCAGAGCTCCACCCTAGGAAGATCAGTGGCTTCT
GGAAGGGTGTAGATTTTTCCATTCTGGCCAATAGAATTTGAAAGAGGAGT
TCTGTTAGAAAGAGGGGTTCTGAGGTCTCTGGCAAGCTCCTATTTCCTGC
TCTTCTCCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCT
CTGTCTCTCTCTCTGTCTCTCTCTCTCTGTCTCTCTCTTTTAGTCATTCT
CTCCCTCCCCCCCTCTTTTTTTGGTGTTTTTGAGTCAGGGCCCCCCCCGC
GTATACCTGAATGACCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAA
CTCAGAAATCCGCTTGCCTCTGTCTCCTACATGCTGGGATTAAAGGCATG
TGCCACCACTGCTCAGTTCCTTCTCTTCTTCTATCATCCCACTTTCTTAG
CTTGATAGACTGTAGCCTGAGTTATGAATAATCCCTCTTCCACATGTCTG
TGCTGCGTGGTTCAACAAGCTCTTTAGATTCCTGTGTCTCAGTTTTTTCA
TCCGCTCCTTGTATTGCGATGTACAGAGTCTTCGGTCATTTTCTTTCGAA
GTCTCAATAATTTTCATTCATTTTCGGGTTTTTCCTCTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAGGGATTTTTGTGTTTCCTA
TCTGAGGTCTTCTAACTGTTTACCTGTGTTTTCTTGAATTTCCTTAAGGG
AGTTATTTATTTCCTTCTTATAGTCCTCCATCATCATTATGAGAAGTGAC
TTTAGATCCATATCTTGCTTTTCTGGTGTGATGGTGTATCCAGGACTTGC
TGAGGTAGGAGAGTTTAATTCTGATGATGCCAAGTAACCTTGGTTTCTAT
TGCTTCTGTTCTCTTGCTTGCCTCCTGCCACCTGATTATCTCAAGTGCTC
GCTGCCCTCAGTATATTTGTATTGCAGCCCGCCCTTCCTGTAATCCCAGT
TTATTCAGAAGTCCTCACACCCCAGCTTTCTCTGAAATCCTGGGATTCTG
GGATCCTGTGAACCTGAGATTCTGGGTGTATCAGAGTTCTAGGCAGTCTA
GCTTCCTCTGAGACCCTGAGATCCTGGAGTGACCAAGCTCCTGGGATTCT
GAGATCCTGTAATCCTAAGATCCTGGGCATGTTAAGTGCTTGGAAGTTGG
ACCTCCTCTGTGGGATCCGTGTAACTGTCTGCTGTGTTTTGAAACCAAAG
CTAGATCAGCCCCTACTGAAGCCAGTTATAATTTCCTTGTGTTCCCTTGT
TCCTGGCTGGCCCAGAACCCCTCCACAGTTGTCCCTGCAACCAATAAGTT
TTGTGTTTTCACCTCCTACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_b11.b1 MSMg01no265_b11.b1 CHROMAT_FILE:
MSMg01no265_b11.b1 PHD_FILE: MSMg01no265_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:28 2005
         (334 letters)



>mm_chr19_11012197_11012930
          Length = 734

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcatagagctcaaagatgtcagatgtgcctgctccctttgacctagctccaatagg 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcatagagctcaaagatgtcagatgtgcctgctccctttgacctagctccaatagg 277

                                                                       
Query: 78  tattctgtcagggatcttctaggttggggtcccagagctccaccctaggaagatcagtgg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tattctgtcagggatcttctaggttggggtcccagagctccaccctaggaagatcagtgg 337

                                                                       
Query: 138 cttctggaagggtgtagatttttccattctggccaatagaatttgaaagaggagttctgt 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cttctggaagggtgtagatttttccattctggccaatagaatttgaaagaggagttctgt 397

                                                                       
Query: 198 tagaaagaggggttctgaggtctctggcaagctcctatttcctgctcttctccatttctc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tagaaagaggggttctgaggtctctggcaagctcctatttcctgctcttctccatttctc 457

                                                                       
Query: 258 tctctctctctctctctctctctctctctttctctctgtctctctctctgtctctctctc 317
           ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||
Sbjct: 458 tctctctctctctctctctctctctctctctctctctctctctctctctctctctttctc 517

                        
Query: 318 tctgtctctctct 330
           |||||||||||||
Sbjct: 518 tctgtctctctct 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)