BAC Information

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BAC

Clone NameMSMg01-265D12
Chromosome19 (Build37)
Map Location 33,767,630 - 33,767,919
singlet/doubletsinglet
Overlap genenone
Upstream geneAtad1, Pten, B430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112
Downstream geneEG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265D12.T7 (MSMg01no265_d12.b1)MSMg01-265D12.TJ (MSMg01no265_d12.g1)
ACCAG406547AG406548
length768763
length of high quality
(start - end)
322 (46 - 367)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no265_d12.b1 PHD_FILE: MSMg01no265_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:38 2005CHROMAT_FILE: MSMg01no265_d12.g1 PHD_FILE: MSMg01no265_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGAGCAATCTCAAATGGCTAAGAAGCACCTAAGGAAATGT
TCAACATCCGAAGCCATCAGGGAAATGCAAATCAAAATGACCCTGAGATT
CCACCTTAAATCAGTCAGAATGGCTAAGATCACAAACTCAGGTAACAGCA
GATGCTGTCAAGGATGTGGAGAAAGAGGAAAAAAAAAAGAGTTTGGTGAG
ATTGTAATCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTCCCTCAGA
AAACTGGACATAGTACTACCTGAGGACCCAGCTATACCATTCCTGGGCAT
ATAGCGAGAAGATGCTCCTTTTTATAACACCGACACATGCTCCACTATGT
TTGTGGCAGCCTTATTTATCCATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTTTAATTAGGTATTTTCCTCATTTACATTTTCAATG
CTATCCCAAAGGTCCCCCATACCCACCCCCCCAATCCCCTACCCACCCAC
TCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTATG
CAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTT
GATACATATGCAGCTAAAGACAAGAGCTCCCGGGTACTGGTTAATTCATA
TTGCTGTTCCACCTATAGGGGTGTAATTCCCTTTAACTCCCTTGGGAAAT
TTCCTAGGCTCTTCCATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCTAATTTGCAGTATAAATA
AATAATTTATCTTTGTGATATAATTTCATTCTTTCTTAATGGGTATTTTC
TGAAAATATGATAATTATCCTACATATTGAAAATTTCCATTTCTTTCTAT
TTGATATAGACTGTAATTAAAGATTAAAGACAAATTTTAAAAATCTTTAC
TTATAAAAATATCCCAGAAATAATCATGCAAATTTTGGATGAAGTCAGAC
TAGGTTAACTACATTGATAAGTAGGTACATTCCTCATGTTCCACATCCTG
CCACACACACATGCCCTTTATGTGCGTTGGCCGCAATATGTTTAGACCTT
ACCTCCTGCAGACATGTTCTCTGGTGCTGCAGCATGGGAGCTCCCTCACT
CCAACCCGGGCACTTGATTTGACATGTGGGACAGTTGCTTTTTGACAGAC
CTAAAGGGAGGATGAAAACATTCAGGCTCACTTGGGAAACAAATGACTGC
CTCTGAGGTCAAGACTTACTTTCATCTTTGACATGTAAACAGGGTTTCTT
AGAAAGAAACAGAATAAAGTTTGTTAGACGGTTTATGGCGGGAAATAAAA
ATTATCACACTGTGAATTAGACCAGAAGGCTTATATTGTTTAAATTTTAA
GTCTTTATCTTTATAGAAGTTCCAGTTTCTGTATTGTGAAAGTCTAAAGA
CCAAATTGCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_d12.g1 MSMg01no265_d12.g1 CHROMAT_FILE:
MSMg01no265_d12.g1 PHD_FILE: MSMg01no265_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:38 2005
         (292 letters)



>mm_chr19_33767430_33768121
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcctaatttgcagtataaataaataatttatctttgtgatataatttcattctttct 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atttcctaatttgcagtgtaaataaataatttatctttgtgatataatttcattctttct 431

                                                                       
Query: 61  taatgggtattttctgaaaatatgataattatcctacatattgaaaatttccatttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taatgggtattttctgaaaatatgataattatcctacatattgaaaatttccatttcttt 371

                                                                       
Query: 121 ctatttgatatagactgtaattaaagattaaagacaaattttaaaaatctttacttataa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctatttgatatagactgcaattaaagattaaagacaaattttaaaaatctttacttataa 311

                                                                       
Query: 181 aaatatcccagaaataatcatgcaaattttggatgaagtcagactaggttaactacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaatatcccagaaataatcatgcaaattttggatgaagtcagactaggttaactacattg 251

                                                             
Query: 241 ataagtaggtacattcctcatgttccacatcctgccacacacacatgccc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ataagtaggtacattcctcatgttccacatcctgccacacacacatgccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)