BAC Information

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BAC

Clone NameMSMg01-267F22
Chromosome19 (Build37)
Map Location 20,264,761 - 20,352,709
singlet/doubletdoublet
Overlap geneLOC100041541
Upstream geneLOC100042218
Downstream geneAnxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267F22.T7 (MSMg01no267_f22.b1)MSMg01-267F22.TJ (MSMg01no267_f22.g1)
ACCAG408110AG408111
length735740
length of high quality
(start - end)		319 (46 - 364)642 (77 - 718)
definitionCHROMAT_FILE: MSMg01no267_f22.b1 PHD_FILE: MSMg01no267_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:25 2005CHROMAT_FILE: MSMg01no267_f22.g1 PHD_FILE: MSMg01no267_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,352,396 - 20,352,709)(20,264,761 - 20,265,402)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAATCCTTGTTTGAAATGTGGCTGCTTTTCTCCAACTATGTAGAT
TGTCTGTTCTAATGAAGGCTGACATTTAATTGCAAAATGTTTTGCTAAAA
CAGAAGAAAAAACATTTTCTTTAAAAATCATCCCTTAATTATAATTTTAA
ACAGCTTTCTTTTGTGAAATTGGTTGCTATTAAATAAAAATTATCTTATT
TTATTTCATGGATTGTTTATGCAATCTGTATGCAATTCAGTCATTGTCAT
TTGATACATATGAAATGGAGTCATTGTCATTGGATATTGATAGTATCCAT
GTGAGCTAGAGTTATTGNATTGCACCTTCAACCCACCCATGTGAATTAGA
GGTACTGTCATTAGATATTGATAGTAAAAAAAGAGATGGAGTTGCTGTTA
TTACTCACCTTTAGGAAGTTGGAAAGTGGATTAAAATATTTAAGTAACTT
AACAGAAACATCTAATTCCTCAAATGAAGTTTTGATCTACTGTTCCTTGG
ATTTCAATTCCTTCTACTCCATCTCCATAATCCTTTGGTGTGATATTGCT
GCATGAAACTAAAGACCACTCTTTAGTATGTCCACTCAGAGTATATGCGA
CTATTACCCCATGTGACCTGTTTCAGCATTCCCCACATCATTCTTGGATT
CATGTTTTTTTTTCCCAATCTCCTTTGCTCTTTTC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTAAGGAACTAAGCAGAGACAT
GAAAGAATTATACTTACTGACTTGCCTCCCTTGGCTTATTCAGCTGCTTT
CTTAAAGAAACAAGGGCAATCTGCATAGAGATGGTACTGCCTACAGTAGG
CTGGACATATAAATGATCAACTACGGAAATACCCTAAAGACACGCCAACT
GGCCAACCCAATAACAACAATTTCTTAGCAGAGGTTTCGTCTATCAATGT
GTGTCAAGTTGACAGCCAATATTAGCCATCCCAGAGAAGAATGCATTTTT
AAAACTAGTTATTAGTTATTATTAGTTATAACTAGTATCTAGTTATTATT
TTTAATTAGAAAAAAAATAAGCCCAAATGTCTAGTTATATCTTGCTCAAT
CACATTGGTAATGTCAAAGATAAAAGGGAGTTAGAACAGTATTAGAAAAG
TTGCCAGAGGGTGAAATATTTGGAAAACTGAAAATCACTTTATCTTTGTC
CTTTTCTAAAAGTAATTTTTCTCCCTCGGGAAAACTGTTTGTTGTTGTTT
TCTGTCCTGTCACAAAGTGGTTTCTGTGCACTCTGCAATCCCCAATAATA
CCAGCAGTGTGGTCGCCAAGGGGCATGACTGTGATTCCATCTGTGTCTAA
TTTCTTCACCAGCCAATTGTTGATATGTAGAGGGCCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_f22.b1 MSMg01no267_f22.b1 CHROMAT_FILE:
MSMg01no267_f22.b1 PHD_FILE: MSMg01no267_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:25 2005
         (319 letters)



>mm_chr19_20352328_20353046
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaatccttgtttgaaatgtggctgcttttctccaactatgtagattgtctgttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaattctaatccttgtttgaaatgtggctgcttttctccaactatgtagattgtctgttc 323

                                                                       
Query: 65  taatgaaggctgacatttaattgcaaaatgttttgctaaaacagaagaaaaaacattttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taatgaaggctgacatttaattgcaaaatgttttgctaaaacagaagaaaaaacattttc 263

                                                                       
Query: 125 tttaaaaatcatcccttaattataattttaaacagctttcttttgtgaaattggttgcta 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttaaaaaccatcccttaattataattttaaacagctttcttttgtgaaattggttgcta 203

                                                                       
Query: 185 ttaaataaaaattatcttattttatttcatggattgtttatgcaatctgtatgcaattca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttaaataaaaattatcttattttatttcatggattgtttatgcaatctgtatgcaattca 143

                                                                       
Query: 245 gtcattgtcatttgatacatatgaaatggagtcattgtcattggatattgatagtatcca 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gtcattgtcatttgatacgtatgaaatggagtcattgtcattggatattgatagtatcca 83

                         
Query: 305 tgtgagctagagtt 318
           ||||||||||||||
Sbjct: 82  tgtgagctagagtt 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_f22.g1 MSMg01no267_f22.g1 CHROMAT_FILE:
MSMg01no267_f22.g1 PHD_FILE: MSMg01no267_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:25 2005
         (642 letters)



>mm_chr19_20264561_20265602
          Length = 1042

 Score = 1210 bits (626), Expect = 0.0
 Identities = 638/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtaaggaactaagcagagacatgaaagaattatacttactgacttgcctcccttggct 60
           |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 201 aggtaaggaactaagcagagacatgaaagaatgatgcttactgacttgcttcccttggct 260

                                                                       
Query: 61  tattcagctgctttcttaaagaaacaagggcaatctgcatagagatggtactgcctacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcagctgctttcttaaagaaacaagggcaatctgcatagagatggtactgcctacag 320

                                                                       
Query: 121 taggctggacatataaatgatcaactacggaaataccctaaagacacgccaactggccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggctggacatataaatgatcaactacggaaataccctaaagacacgccaactggccaa 380

                                                                       
Query: 181 cccaataacaacaatttcttagcagaggtttcgtctatcaatgtgtgtcaagttgacagc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaataacaacaattccttagcagaggtttcgtctatcaatgtgtgtcaagttgacagc 440

                                                                       
Query: 241 caatattagccatcccagagaagaatgcatttttaaaactagttattagttattattagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatattagccatcccagagaagaatgcatttttaaaactagttattagttattattagt 500

                                                                       
Query: 301 tataactagtatctagttattatttttaattagaaaaaaaataagcccaaatgtctagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataactagtatctagttattatttttaattagaaaaaaaataagcccaaatgtctagtt 560

                                                                       
Query: 361 atatcttgctcaatcacattggtaatgtcaaagataaaagggagttagaacagtattaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatcttgctcaatcacattggtaatgtcaaagataaaagggagttagaacagtattaga 620

                                                                       
Query: 421 aaagttgccagagggtgaaatatttggaaaactgaaaatcactttatctttgtccttttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagttgccagagggtgaaatatttggaaaactgaaaatcactttatctttgtccttttc 680

                                                                       
Query: 481 taaaagtaatttttctccctcgggaaaactgtttgttgttgttttctgtcctgtcacaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaagtaatttttctccctcgggaaaactgtttgttgttgttttctgtcctgtcacaaa 740

                                                                       
Query: 541 gtggtttctgtgcactctgcaatccccaataataccagcagtgtggtcgccaaggggcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtggtttctgtgcactctgcaatccccaataataccagcagtgtggtcgccaaggggcat 800

                                                     
Query: 601 gactgtgattccatctgtgtctaatttcttcaccagccaatt 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gactgtgattccatctgtgtctaatttcttcaccagccaatt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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