Query= MSMg01no267_h05.b1 MSMg01no267_h05.b1 CHROMAT_FILE:
MSMg01no267_h05.b1 PHD_FILE: MSMg01no267_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:31 2005
(317 letters)
>mm_chr19_15574497_15575214
Length = 718
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%), Gaps = 1/311 (0%)
Strand = Plus / Plus
Query: 4 ggaattcca-catcaaagtgctggcatctagggaagtggttcttcactgtgctgtaacct 62
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattccaacatcaaagtgctggcatctagggaagtggttcttcattgtgctgtaacct 263
Query: 63 agttaaaaacaccacaaaggggtgggggtaataaacaaaggttcagaaaagatgaagggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttaaaaacaccacaaaggggtgggggtaataaacaaaggttcagaaaagatgaagggg 323
Query: 123 taataaagtcagcccttaatgatggcattcatccttcattgaagggaaagccatgtatga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taataaagtcagcccttaatgatggcattcatccttcattgaagggaaagccatgtatga 383
Query: 183 cccaattaacggtcccacctttcaacaccattacatttcagtgtaagtttaagagggaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccaattaacggtcccacctttcaacaccattacatttcagtgtaagtttaagagggaac 443
Query: 243 aagcattcaagccattctagtacctaagttgtaattcttccagaagtaattgtctctgtg 302
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 444 aagcattcaagccattctagtacctaagttgtaaaccatccagaagtaattgtctctgtg 503
Query: 303 ttttattgctc 313
|||||||||||
Sbjct: 504 ttttattgctc 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space: 218372
Effective search space used: 218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_h05.g1 MSMg01no267_h05.g1 CHROMAT_FILE:
MSMg01no267_h05.g1 PHD_FILE: MSMg01no267_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:31 2005
(283 letters)
>mm_chr19_15740617_15741299
Length = 683
Score = 505 bits (261), Expect = e-147
Identities = 273/277 (98%)
Strand = Plus / Minus
Query: 1 ctaagtgtagctcttcagttctcaaagcaatgcaagtcggatggtgctcatagccagggg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 477 ctaagtgtagctcttcagttctcaaagcaatgcaagtcggatggtgctgatagccagggg 418
Query: 61 aagaagacactcccaagggacagcccaggcttagcactgcagttgactttggttttcagc 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aagaagacacccccaagggacagcccaggcttagcactgcagttgactttggttttcagc 358
Query: 121 tgcaggtaaacaagacacaatcctgtccttggaacggaaagacaaagctcagagtctgac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 357 tgcaggtaaacaagacacaatcctgtccttggaacggaaagacaaagctcagagtcggac 298
Query: 181 tttgtagacatctgtgctggttgacacaattaacaactgtctacactgctgttcacaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 297 tttgtagacatctgtgctggttgacacaattaacaactgtctacactgctgttcacacgc 238
Query: 241 tccaagtggaaaaaccctttttctattgttcgctcaa 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 tccaagtggaaaaaccctttttctattgttcgctcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
