Query= MSMg01no267_n06.b1 MSMg01no267_n06.b1 CHROMAT_FILE:
MSMg01no267_n06.b1 PHD_FILE: MSMg01no267_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:59 2005
(277 letters)
>mm_chr19_55462997_55463674
Length = 678
Score = 513 bits (265), Expect = e-150
Identities = 271/273 (99%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttcatacagaaagttaaaaatcatatc-cccatatcctgtgttatatattatt 62
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 ggaattcttcatacagaaagctaaaaatcatatctcccatatcctgtgttatatattatt 263
Query: 63 gcttggttatttctcttattttcctttgtcagcagttgtaccaatttcagtgccgtagtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcttggttatttctcttattttcctttgtcagcagttgtaccaatttcagtgccgtagtt 323
Query: 123 gatgtttctgaggctgtactgtgatagaattattggtggtagaatgataatttcaggaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatgtttctgaggctgtactgtgatagaattattggtggtagaatgataatttcaggaat 383
Query: 183 tgtattgtccgtgtctttgatttgggtgtaacactaatatttatggatttggtgatgcaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtattgtccgtgtctttgatttgggtgtaacactaatatttatggatttggtgatgcaa 443
Query: 243 ccgagcttgcaagcagatggctccgaaggactc 275
|||||||||||||||||||||||||||||||||
Sbjct: 444 ccgagcttgcaagcagatggctccgaaggactc 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space: 179292
Effective search space used: 179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no267_n06.g1 MSMg01no267_n06.g1 CHROMAT_FILE:
MSMg01no267_n06.g1 PHD_FILE: MSMg01no267_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:59 2005
(645 letters)
>mm_chr19_55619336_55620380
Length = 1045
Score = 1127 bits (583), Expect = 0.0
Identities = 630/649 (97%), Gaps = 8/649 (1%)
Strand = Plus / Minus
Query: 1 actgttgcaagacggcacggtgtgcagataccacctgctgacttccgaccaggaaagata 60
||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 845 actgttgcaagaccgaacggtgtgcagataccacctgctgacttgtgaccaggaaagata 786
Query: 61 aagagtagcagtcccagaacaaggcctggtctagagtcttctgttcactacgtaggcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aagagtagcagtcccagaacaaggcctggtctagagtcttctgttcactacgtaggcggc 726
Query: 121 cttggtcagatttgcttaccccaggttcccacacatacaaggagagaagcaggatatttt 180
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct: 725 cttggtcagatttgcttaccccaggttcccatacacacgaggagagaagcaggatatttt 666
Query: 181 acatggtatctattaaaacaaaacaacacgcgtcaagctcccagcaggatattttgttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 acatggtatctattaaaacaaaacaacacgcgtcaagctcccagcaggatattttgttca 606
Query: 241 tttgactgaagggtattttaaccagtgtggtttttaaaaaattagtg---ttttatctct 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 605 tttgactgaagggtattttaaccagtgtggtttttaaaaaattagtgaaa----atctct 550
Query: 298 ttgaaccgtctacattgtcttctaaaacagtgggcttcacctacatggagacagcgttcc 357
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgaaaagtctacattgtcttctaaaacagtgggcttcacctacatggagacagcgttcc 490
Query: 358 agtcagcgtcagttctgcatgggacccacgtacacctcctcttaggctttcctgtctttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agtcagcgtcagttctgcatgggacccacgtacacctcctcttaggctttcctgtctttc 430
Query: 418 tgtacgtaggctctctggtctcagcctcattgtgctgcccaggctgcctgcctctcagtg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtacgtaggctctctggtctcagcctcattgtgctgcccaggctgcctgcctctcagtg 370
Query: 478 cgtaaccttcctgcctctgcgg-ccagctgctggcattacaggtatatgtccttgtgttt 536
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 369 cgtaaccttcctgtctctgtggcccagctgctggcattacaggtatatgtccttgtgttt 310
Query: 537 ggccagataagccaatcttcaaccgtgtgtgattccagaccactagtaaccgttttacta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggccagataagccaatcttcaaccgtgtgtgattccagaccactagtaaccgttttacta 250
Query: 597 acaaaattggcaaaataaagttttagaagtaaattgattcctgggaaca 645
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acaaaattggcaaaataaagttttagaagtaaattgattcctgggaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
