BAC Information

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BAC

Clone NameMSMg01-268L24
Chromosome19 (Build37)
Map Location 12,651,427 - 12,651,720
singlet/doubletsinglet
Overlap gene4632417K18Rik
Upstream geneMs4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046
Downstream geneEG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L24.T7 (MSMg01no268_l24.b1)MSMg01-268L24.TJ (MSMg01no268_l24.g1)
ACCAG409074AG409075
length737743
length of high quality
(start - end)
321 (46 - 366)295 (76 - 370)
definitionCHROMAT_FILE: MSMg01no268_l24.b1 PHD_FILE: MSMg01no268_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005CHROMAT_FILE: MSMg01no268_l24.g1 PHD_FILE: MSMg01no268_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCCACTAAGTAAGCCTTCAGTCAAGTTTCGGTGGCTGTTGAG
TACCTCCATGATATAAGAGCTACTATCAGACCTTTCAGAATATCTTGCAG
TGATGATCATTGTGGCTTGCAGATGTTATACCTACATAAGATGACTGATT
GCTCCCTTAGCCACTTGCATAGCTCTATCTGATACTGTAAGAGCTATTTT
TCAGGGTTGAGGCTTTCAGGTCAGATCCATATAGATTCCTCTAAGTTATG
GGTTCAATGTGTGTGGAATCTTTAGCAATAGTATCTTATATTATTTTTCT
AGAAGACAACTGAAGGCTTTGCTAATAACTGACATAATTTGGGGTGTCTT
TTAGATAGATGTTTGGGGTGTTTTTAAATAGATGAATACTTAAAGGACCC
AAGAGTATAATTAGCAAGGAACTTTTAAAAAATTAAACATTTATTTTTTT
AAATTTTTATGTATGTGAGGCTTTTGCCTATGTGTATATATGTACCATAG
CCATGAGTGGGGATCAGAAGAAGGCATTAGATGCCCTGAAACTGGACTTC
CAGCCAGTTATGAGTAGTTATGTGGGTGCTGGGATTAGAAGCTGGGTCCT
CTGGAAGAGCAGCTCATACTCTTGTTTCTGTCCCCCACCTCTTCTCTGTG
TAGCCGTGGCTGTCCTGGAACTCTTCACTGANNAGAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGATGCAGATACCCTACAAAGGGTT
TGCAGCTTGGAAACTCAAAATTATTTTCTACTTACACTGATGTTAATATC
TGCTGTTGGTTTAAAATGGAGATGATAAGGCCAGGCAAACAGGCATGAAG
AGAACTGAGTAGTGGTCTGAAAACAAAAGAAATTGGTAAGAAACATCAAA
AAGTAATATGGAAAGGTTATCCAACTTAGTTACTGCTTTAGGTCCTTTGT
TTGAAATGGCACTTCTCCCTGCTGTCTAAGCAAAAGAGGAAAAAATGGTT
TAAATGACATACTGACACCTTTTTTAGTGCCACACCCCCACTGTTGCCAA
CTCTGTTTCCTGCCTTTGAGGCCCTTCCGGTGCTAAGAACCACTAGACCA
TATGCCACAAAGGAGAGCAAGCTTGTGCTTCTTCAGTAGGTCACCATCAG
AAGACACAGTCAAGGAATGAGTGCTGTAGGCAGTGAACTGATTTCCATAG
GCTCCATCACATAGTTCTCGGAACCTTGCTTTAAAAGTTTCAGTTCATTC
TACAGAGCTCANACTTCTATTCAAAAATCACAAAACTCCAGTGAGGATAT
CTTGGAGAATTTATATTTACATTATTTTCTAACGAANAGACAAGAAGGAG
GTGGAAACAGGAGACGACCATATAATGAAATTCCAAATACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l24.g1 MSMg01no268_l24.g1 CHROMAT_FILE:
MSMg01no268_l24.g1 PHD_FILE: MSMg01no268_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:05 2005
         (295 letters)



>mm_chr19_12651227_12651921
          Length = 695

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgcagataccctacaaagggtttgcagcttggaaactcaaaattattttctacttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agatgcagataccctacaaagggtttgcagcttggaaactcaaaattattttctacttac 435

                                                                       
Query: 61  actgatgttaatatctgctgttggtttaaaatggagatgataaggccaggcaaacaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 actgatgttaatatctgctgttggtttaaaatggagatgataaggccaggcaaacaggca 375

                                                                       
Query: 121 tgaagagaactgagtagtggtctgaaaacaaaagaaattggtaagaaacatcaaaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgaagagaactgagtagtggtctgaaaacaaaagaaattggtaagaaacatcaaaaagta 315

                                                                       
Query: 181 atatggaaaggttatccaacttagttactgctttaggtcctttgtttgaaatggcacttc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atatggaaagtttatccaacttagttactgctttaggtcctttgtttgaaatggcacttc 255

                                                                 
Query: 241 tccctgctgtctaagcaaaagaggaaaaaatggtttaaatgacatactgacacc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tccctgctgtctaagcaaaagaggaaaaaatggtttaaatgacatactgacacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)