BAC Information

Click to search

BAC

Clone NameMSMg01-269B10
Chromosome19 (Build37)
Map Location 18,327,630 - 18,328,172
singlet/doubletsinglet
Overlap genenone
Upstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269B10.T7 (MSMg01no269_b10.b1)MSMg01-269B10.TJ (MSMg01no269_b10.g1)
ACCAG409316AG409317
length720736
length of high quality
(start - end)
328 (46 - 373)543 (72 - 614)
definitionCHROMAT_FILE: MSMg01no269_b10.b1 PHD_FILE: MSMg01no269_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:28 2005CHROMAT_FILE: MSMg01no269_b10.g1 PHD_FILE: MSMg01no269_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGCGAAGTTCTTTGATCCATTT
AGATTTGACCTTAGTACAACGAGATAAGTATGTATCGATTCGCATTCTTC
TACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTTTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCTGTAG
TAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAAGTTCTTTTATCCTT
GAGAAGAGTTTTTGCTATCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTTTCAAGTTCTGGATTGTCATTTCAT
TCAACCATGCATTTTCATTTTCTTGACCGTCACTCAAATATTTATTGTTA
GCCCCTTCGAGTTTAACGGAGTGTTTGCTCTGCCTTCTTTCAACTCCTTT
AATTCTTTGATGAGGTTTAGGATAATTCTTTGAAATTCCATTCGGGTGTT
CATCTACTTAGTTGTAGTTAGAGAATACTTTTGTATAGAACTTGAAGGGT
TTTGAGAGAGGTGCTGTTCCAGCCATTTATGTTGTTTTTGTGATGGATCC
TGGGCATGTGGATCTTTTTGTTTGCTTGTGCACCTATTATGATGATAATC
TGCCCTGTCTCAGATTGCGTCACTGCAAAGGATGTGTAGACATGAGCTAG
AAAGCCTGCTGACTGAACAGCTTAATTAGACCACACACAGATGGCACCCA
ATCCCTGGGACAAGAGCTACGCCTGGAAATTCGAGGGCAGGGTGAGTGGG
TGGGGGAACACCCTCATAGAAGCAGGGGGAGGGGAATAGGATAGGGGGCT
TCGGGAGCGGGGACTGGGAAAAAGAATAACATTTGAAATGTAAATAAAGA
AAATATCTAATTTTTAAAAACAAAAACCAAAACCAAAATGAGCAGAGGGA
AGGATGGNTGAGAAAAGAATGGTCTCAGCAGCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_b10.g1 MSMg01no269_b10.g1 CHROMAT_FILE:
MSMg01no269_b10.g1 PHD_FILE: MSMg01no269_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:28 2005
         (543 letters)



>mm_chr19_18327430_18328372
          Length = 943

 Score = 1035 bits (535), Expect = 0.0
 Identities = 541/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttcaagttctggattgtcatttcattcaaccatgcattttcattttcttgaccgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttcaagttctggattgtcatttcattcaaccatgcattttcattttcttgaccgtc 260

                                                                       
Query: 61  actcaaatatttattgttagccccttcgagtttaacggagtgtttgctctgccttctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaaatatttattgttagccccttcgagtttaacggagtgtttgctctgccttctttc 320

                                                                       
Query: 121 aactcctttaattctttgatgaggtttaggataattctttgaaattccattcgggtgttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aactcctttaattctttgatgaggtttaggataattctttgaaattccattctggtgttc 380

                                                                       
Query: 181 atctacttagttgtagttagagaatacttttgtatagaacttgaagggttttgagagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctacttagttgtagttagagaatacttttgtatagaacttgaagggttttgagagagg 440

                                                                       
Query: 241 tgctgttccagccatttatgttgtttttgtgatggatcctgggcatgtggatctttttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgttccagccatttatgttgtttttgtgatggatcctgggcatgtggatctttttgt 500

                                                                       
Query: 301 ttgcttgtgcacctattatgatgataatctgccctgtctcagattgcgtcactgcaaagg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttgcttgtgcacctattatgatgataatctgccctgtctcagattgtgtcactgcaaagg 560

                                                                       
Query: 361 atgtgtagacatgagctagaaagcctgctgactgaacagcttaattagaccacacacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgtagacatgagctagaaagcctgctgactgaacagcttaattagaccacacacaga 620

                                                                       
Query: 421 tggcacccaatccctgggacaagagctacgcctggaaattcgagggcagggtgagtgggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcacccaatccctgggacaagagctacgcctggaaattcgagggcagggtgagtgggt 680

                                                                       
Query: 481 gggggaacaccctcatagaagcagggggaggggaataggatagggggcttcgggagcggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggggaacaccctcatagaagcagggggaggggaataggatagggggcttcgggagcggg 740

              
Query: 541 gac 543
           |||
Sbjct: 741 gac 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)