Query= MSMg01no269_d02.b1 MSMg01no269_d02.b1 CHROMAT_FILE:
MSMg01no269_d02.b1 PHD_FILE: MSMg01no269_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:36 2005
(692 letters)
>mm_chr19_18209851_18210943
Length = 1093
Score = 915 bits (473), Expect = 0.0
Identities = 501/513 (97%), Gaps = 6/513 (1%)
Strand = Plus / Minus
Query: 5 gaattcaagggcatcaccaaggacccagattcttccacatactgccattctttgggtacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattcaagggcatcaccaaggacccagattcttccacatactgccattctttgggtacc 487
Query: 65 agtttgctcagccttttcttggctacgagataatttgagatagttattatcagtccatgc 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 486 agtttgctcagccttttcttggctatgagataatttgagatagttattatcagtccatgc 427
Query: 125 ataacattcagagcttccaattttgagagaaagaagtgatctcttcccctttcctgttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ataacattcagagcttccaattttgagagaaagaagtgatctcttcccctttcctgttct 367
Query: 185 tggccatgaggtgagcacatgatgggtgctcctgtcacaggtgctgtgtcagcacatccc 244
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggccaggaggtgagcacatgataggtgctcctgtcacaggtgctgtgtcagcacatccc 307
Query: 245 caaaatgattggagccaccgactgggagaaaatctctaaaatttctttttccaaaaagag 304
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 306 cgaaatgattggagccaccgactgggagcaaatctctaaaatttctttttccaaaaagag 247
Query: 305 aaatgtgagtcaaattgatgagtattctaaaaaaa-gaggatggggctggagagatggtt 363
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 aaatgtgagtcagattgatgagtattctaaaaaaaagaggatggggctggagagatggtt 187
Query: 364 cagccatttataatgtttgtggagccatccgcagcaccatctggtagctcacaaccatct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cagccatttataatgtttgtggagccatccgcagcaccatctggtagctcacaaccatct 127
Query: 424 gaaatggcagtgccaggtgacccaatgccctcttttgttttgacctctattctcaatggg 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 126 gaaatggcagtgccaggtgacccaatgccctcttttg-----acctctattctcaatggg 72
Query: 484 catggtatacaggcatatatgcaggaaaaatac 516
|||||||||||||||||||||||||||||||||
Sbjct: 71 catggtatacaggcatatatgcaggaaaaatac 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space: 738606
Effective search space used: 738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_d02.g1 MSMg01no269_d02.g1 CHROMAT_FILE:
MSMg01no269_d02.g1 PHD_FILE: MSMg01no269_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:36 2005
(659 letters)
>mm_chr19_18050052_18051106
Length = 1055
Score = 1193 bits (617), Expect = 0.0
Identities = 647/659 (98%), Gaps = 4/659 (0%)
Strand = Plus / Plus
Query: 1 acttacacaaaaagtacttaaagtagatgtgagtcaaacatctcagagtagctgatataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttacacaaaaagtacttaaagtagatgtgagtcaaacatctcagagtagctgatataa 260
Query: 61 acatataaaatattgaaggaggaaaaaatctatactcagcatttaaaattctcagagtga 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 acatataaaatattgaaagaggaaaaaatctatactcaacatttaaaattctcagagtga 320
Query: 121 catcacacagcaaatatcaagtccaatgctagaggtgagctaggagaaccaggctcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcacacagcaaatatcaagtccaatgctagaggtgagctaggagaaccaggctcagaa 380
Query: 181 ccaggcatacagttagttgtccttctgctggactgcatcaatttatatttgtttttcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggcatacagttagttgtccttctgctggactgcatcaatttatatttgtttttcctc 440
Query: 241 ctggggaaggcattcttattctttttgattctttaatctgtttcataatcctttcattct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggggaaggcattcttattctttttgattctttaatctgtttcataatcctttcattct 500
Query: 301 tcctgtaaatagaaaggaagtgcagtcatagctaaagaacgggctggcatgccaaacaaa 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tcctgtaaatagaaaggaagtgcagtcatagctaacgaacgggctggcatgccaaacaaa 560
Query: 361 aggctgacatgtgagaggaaatgtccagtttgtcagcacatcatggaagccaaatcacct 420
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aggctgacatgtgagagaaaatgtccagcttgtcagcacatcatggaagccaaatcacct 620
Query: 421 ctcacacatagctacaggtagcagaccgacccaggacatcttggaactcagcatttctga 480
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 ctcacacatagctacaggtagcagacc----caggacatcttggaactcagcatttctga 676
Query: 481 gttagaggagctcacttacctttggtgaacatctgtttaagggtgtagcaatttacctca 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 677 gttagaggagctcacttacctttggtgaacatctgttttagggtgtagcaatttacctca 736
Query: 541 cttagacttcctgactctctaatgtggtagtagtattacagttttacagataagaatatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttagacttcctgactctctaatgtggtagtagtattacagttttacagataagaatatt 796
Query: 601 tttaggaaagtaggcaaaatagtttcctaaataaagccccccagtttagcaatggcaga 659
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 797 tataggaaagtaggcaaaatagtttcctaaataaaggcccccagtttagcaatggcaga 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1055
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1045
Effective search space: 678205
Effective search space used: 678205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
