Query= MSMg01no269_m06.b1 MSMg01no269_m06.b1 CHROMAT_FILE:
MSMg01no269_m06.b1 PHD_FILE: MSMg01no269_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:17 2005
(678 letters)
>mm_chr19_4567295_4568372
Length = 1078
Score = 1261 bits (652), Expect = 0.0
Identities = 667/672 (99%)
Strand = Plus / Plus
Query: 4 ggaattctcagtgcagctttctaggtgatcctctcaactcattgttcatgggcttagctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcagtgcagctttctaggtgatcctctcaactcattgttcatgggcttagctc 263
Query: 64 tgatttgagtgactaaggttcatcttccagaatcaatgtttacttgactttgtggaagtc 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggtttgagtgactaaggttcatcttccagaatcaatgtttacttgactttgtggaagtc 323
Query: 124 ctcttccttcgtgtatagaaagggaagtggaagctgatactatcagctctaacaaaagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcttccttcgtgtatagaaagggaagtggaagctgatactatcagctctaacaaaagat 383
Query: 184 ggagaagagatggaggcttgacactgccacggggcccgggagggttcagcttccactggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagaagagatggaggcttgacactgccacggggcccgggagggttcagcttccactggc 443
Query: 244 tctaatttagaagagttgcatccagactgtgcctacctagggccttggccaagctcagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctaatttagaagagttgcatccagactgtgcctacctagggccttggccaagctcagag 503
Query: 304 aaagctgtactttattatcagcttctctggatgtggccagaaccaggctgatcccttttt 363
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 aaagctgtactttattagcagcttctctggatgtggccagaaccaggctgagcccttttt 563
Query: 364 gagcaattgctctttagttcagaaggtcacacaaaagagagcagtgggctgtgctgtccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagcaattgctctttagttcagaaggtcacacaaaagagagcagtgggctgtgctgtccc 623
Query: 424 aagtaaccttgtcaaagctcagctgggtgctttgttttttatgatggcaatgtgcttaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagtaaccttgtcaaagctcagctgggtgctttgttttttatgatggcaatgtgcttaac 683
Query: 484 aggaggggcccttcctatcctcaccctgtggtcttgaggccaatagcacaaaagcaatct 543
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggaggggcccttcctgtcctcaccctgtggtcttgaggccaatagcacaaaagcaatct 743
Query: 544 ttgtagcatatagcatttaaaaggctactttttaataaaatctagtacaagcacacagac 603
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 744 ttgtagcatatagcatttaaaaggctactttctaataaaatctagtacaagcacacagac 803
Query: 604 cttaggtaatgtggcctggtgagggatctgtctcttggctccagtaggagaaagatcgtc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttaggtaatgtggcctggtgagggatctgtctcttggctccagtaggagaaagatcgtc 863
Query: 664 atattacctgtt 675
||||||||||||
Sbjct: 864 atattacctgtt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_m06.g1 MSMg01no269_m06.g1 CHROMAT_FILE:
MSMg01no269_m06.g1 PHD_FILE: MSMg01no269_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:17 2005
(626 letters)
>mm_chr19_4704521_4705545
Length = 1025
Score = 1122 bits (580), Expect = 0.0
Identities = 617/632 (97%), Gaps = 8/632 (1%)
Strand = Plus / Minus
Query: 1 ttatagtttcagctactcagtaggctctgagaaaggaggattgcttgaccctcaaaacgt 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 919 ttatagtttcagctactcagtaggctctgagaaaggaggattgcttgagcctcaaaacat 860
Query: 61 gtc-----tcaaatcaaatcaaatcaaatcaaatttacaataggatggtattcttgagac 115
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gtctcaaatcaaatcaaatcaaatcaaatcaaatttacaataggatggtattcttgagac 800
Query: 116 atttggttcttcagttgtaagagccaggtgctttagagagatttccattttttttttcac 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 799 atttggttcttcagttgtaagagccaggtgctttagagagatttccatttttttttt-ac 741
Query: 176 cagaagtttcctttaaatatcaagagacagacagatccggtaagcataaagttcagagat 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cagaagtttcctttaaatatcaagagacagacagatccggtaagcataaagttcagagat 681
Query: 236 tattccatcatctgttgattggaaaaggcatgtggaatttcacatagaaaatatgtc-tg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 680 tattccatcatctgttgattggaaaaggcatgtggaatttcacatagaaaatatgtcat- 622
Query: 295 tttctgggactggagcagcactggaaaggctgaggacaggagagcaagagtgtccccatg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctgggactggagcagcactggaaaggctgaggacaggagagcaagagtgtccccatg 562
Query: 355 cctttgacatagccaagcatggaggacaaaaaaggtgtggtctctactccattcctggaa 414
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 561 cctttgacatagccaagcatggaggacaaaaaaggcgtggactctactccattcctggaa 502
Query: 415 ctctaagaagacacagtctgtcaaaatacctgatgcagtagtgggcaatggtctcagagt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctaagaagacacagtctgtcaaaatacctgatgcagtagtgggcaatggtctcagagt 442
Query: 475 atcaggagtactgactgtgtaggcaaaggtctggtggaatcctccctattgaccccgccc 534
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 441 atcaggagtactgactgtgtaggcaaagggctggtggaatcctccctattgacccctccc 382
Query: 535 tattctttcatctcatcctctaaacctggatctccttggctccttgatatttggaggaaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattctttcatctcatcctctaaacctggatctccttggctccttgatatttggaggaaa 322
Query: 595 ttttgaaaagttccttgggattcatcccctta 626
|||||||||||||||||| |||||||||||||
Sbjct: 321 ttttgaaaagttccttggtattcatcccctta 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1025
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1015
Effective search space: 625240
Effective search space used: 625240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
