BAC Information

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BAC

Clone NameMSMg01-270J03
Chromosome19 (Build37)
Map Location 34,370,119 - 34,370,747
singlet/doubletsinglet
Overlap geneFas
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2
Downstream geneCh25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270J03.T7 (MSMg01no270_j03.b1)MSMg01-270J03.TJ (MSMg01no270_j03.g1)
ACCAG410368AG410369
length634722
length of high quality
(start - end)		---643 (80 - 722)
definitionCHROMAT_FILE: MSMg01no270_j03.b1 PHD_FILE: MSMg01no270_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:15 2005CHROMAT_FILE: MSMg01no270_j03.g1 PHD_FILE: MSMg01no270_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGGGCCTCAAAATTGGGGGGGGGAANGGGGCCNNGTACCGGACCGACG
GGGNNNNGGNGGTGTTNGCAAAAAAAAGAGGAGAGNNTTTTTTTTTTTTT
CTGGGGGGGGGTGGAGGGGGGGGGTTTTTTGGGGCGCCCCCGGGGGGGCC
TAAGGAAGGGGAAACCGGGGGGGGGGAGGGCGGCAAAAAAACAACACCCC
CCCCAATAAATAACCCTTTCCCCCCCCCCTTTTTNGAGGAGGGGGTGGGG
GGGCGGGCAACCGTGTTAAAAAAAATTCGCGTCTGTTCGGCAAGAGGGAA
AAAAGGGATCGTAGCCGCGGGCGGTCCCCCGCGCCCCCCTTTTTTTTTTT
TTTTTTCGAGAAAGGGCCACCCCAAAAAAAAACAGCCACCCCCCCCGCGC
GGGTTTTTTTGTTAATGGGATTAGAAAGACAAACCCGCCCGGGCCCCACG
GGATTTTTTTCGAGTGGAGTTTTTAACCCGCACACACACGCCCGGCGCGG
AGAGGGAGAAAAAAAAAAAACAAAACCCCCTCGTTTTTTTTTTTTTTTAC
CCCCCCCCCCCCCCCCCATACTTATATAATGTGAGGGGCGGGGCTCCTTC
GTTAAAATTTATTAGACTACAGTGTGGGGCGGCC

CACCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGTTCCAAAAGTCCCGT
ACTAAGCACATGTTTTATACTAGGTGCCAGAGACCACTTACTAAAGAGAA
ACAAACAGCATGGGATTTAAAGATGCAATGAAATAATGCAATAAAAATTA
TCTTGGAGCCAGGTTTAAGATAGTGAATCCATCTCTTCTTCTTTTTGAGT
AAGTAAATATTTAAAAATTGCCCAAACAGTGTGAAATTAAACATAAATTC
TGGAAAATAAAGTCATTTTTTTAAAAATCAGCCTTATGGGAACATCTAAA
AATTTTACTTACAGCTTCTGAGCCTTATCCACACAGGTACATAATTGTAT
GTTTAATCAGTGTGATGTATGCTCTGTTCTCTGACACTCTCTCTCTCTCT
ATATATATATATGGTAACCGGCTTATGTTTCTTAAGGTAATGATCACCTC
ATGATTTTTTACTTGATATTTTATAGAGAAGGTATTTATTAAACGACCTT
GAATTAGCATAATTTCATTTATTAATTTTATATTTTATAAGGAAATGTTT
TGGGTGTAAGAAGTACCTCGATGGTAGTGTTTACCTAGCATGTACCAGGC
CTGAATTTGATCCCAGCACAAAGAAGCAAACAAACAAATCAGTCAATTCC
ACAAAGAAGAAAGCAGTGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_j03.g1 MSMg01no270_j03.g1 CHROMAT_FILE:
MSMg01no270_j03.g1 PHD_FILE: MSMg01no270_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:15 2005
         (643 letters)



>mm_chr19_34369919_34370961
          Length = 1043

 Score = 1104 bits (571), Expect = 0.0
 Identities = 619/643 (96%), Gaps = 14/643 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggttccaaaagtcccgtactaagcacatgttttatactaggtgccagagaccactt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tcttggttccaaaagtcccgtactaagcacatgttttatacgaggtgccagagaccactt 260

                                                                       
Query: 61  actaaagagaaacaaacagcatgggatttaaagatgcaatgaaataatgcaataaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaagagaaacaaacagcatgggatttaaagatgcaatgaaataatgcaataaaaatt 320

                                                                       
Query: 121 atcttggagccaggtttaagatagtgaatccatctcttcttctttttgagtaagtaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttggagccaggtttaagatagtgaatccatctcttcttctttttgagtaagtaaata 380

                                                                       
Query: 181 tttaaaaattgcccaaacagtgtgaaattaaacataaattctggaaaataaagtcatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaaaattgcccaaacagtgtgaaattaaacataaattctggaaaataaagtcatttt 440

                                                                       
Query: 241 tttaaaaatcagccttatgggaacatctaaaaattttacttacagcttctgagccttatc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaaaatcagccttatgggaacatctaaaaattttacttacagcttctgagccttatc 500

                                                                       
Query: 301 cacacaggtacataattgtatgtttaatcagtgtgatgtatgctctgttctctgacactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacacaggtacataattgtatgtttaatcagtgtgatgtatgctctgttctctgacactc 560

                                                                       
Query: 361 tctctctctctatatatatatatggtaaccggcttatgtttcttaaggtaatgatcacct 420
                      |   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 -----------a---atatatatggtaaccggcttatgtttcttaaggtaatgatcacct 606

                                                                       
Query: 421 catgattttttacttgatattttatagagaaggtatttattaaacgaccttgaattagca 480
           |||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 607 catgacattttacttgatattttatagagaaggtatttattaaatgaccttgaattagca 666

                                                                       
Query: 481 taatttcatttattaattttatattttataaggaaatgttttgggtgtaagaagtacctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 667 taatttcatttattaattttatattttataaggaaatgttttgggtgtaagaagtacttt 726

                                                                       
Query: 541 gatggtagtgtttacctagcatgtaccaggcctgaatttgatcccagcacaaagaagcaa 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 727 gatgatagtgtttacctagcatgtaccaggcctgaatttgatcccagcacaaacaagcaa 786

                                                      
Query: 601 acaaacaaatcagtcaattccacaaagaagaaagcagtgaata 643
           | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ataaacaaatcagtcaattccacaaagaagaaagcagtgaata 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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