Query= MSMg01no270_o13.b1 MSMg01no270_o13.b1 CHROMAT_FILE:
MSMg01no270_o13.b1 PHD_FILE: MSMg01no270_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:40 2005
(543 letters)
>mm_chr19_5557383_5558319
Length = 937
Score = 977 bits (505), Expect = 0.0
Identities = 528/539 (97%), Gaps = 6/539 (1%)
Strand = Plus / Plus
Query: 5 gaattccagatcctcccgcttccaccttccaagtatggggattacagatgtgcacaccct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatcctcccgcttccaccttccaagtatggggattacagatgtgcacaccct 264
Query: 65 acctagcttccgacctttgggcatgtgttgtgctcccagaacaggtcagcgagccagatt 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctagcttccgagctttgggcatgtgttgtgctcccagaacaggtcagcgagccagatt 324
Query: 125 attagccagggggaggcttggaaggagggggacctggagcttagaagaggcacctggaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attagccagggggaggcttggaaggagggggacctggagcttagaagaggcacctggaat 384
Query: 185 tctcctggagttccagctttcaggctcagtctgtccctaggtcccttccttttctgtgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcctggagttccagctttcaggctcagtctgtccctaggtcccttccttttctgtgac 444
Query: 245 ttaactcatcaaggacaagccttagaggaatggctccaaggcaagtccttgaacctccca 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcactcatcaaggacaagccttagaggaatggctccaaggcaagtccttgaacctccca 504
Query: 305 tagagcaggaatgttattcgaccccccgctacaagggcctgtttcattctaaaaataata 364
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 tagagcaggaatggtattcgacccccagctacaagggcctgtttcattctaaaaataata 564
Query: 365 ataacccaccatccttcctgtcaccagagtaaacaaccaagtagagagtccagtaccaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataacccaccatccttcctgtcaccagagtaaacaaccaagtagagagtccagtaccaga 624
Query: 425 agaggtggtgggtggtggggaggagccaagtgagtccccgaactgcgctggctctggtgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 agaggtggtgggtggtggggaggagccaagtgagtccccgaactgcgctgg------tgg 678
Query: 485 agaacggagtcattgtcttccttgcctgccttctggtgcgggctaccagctctccccag 543
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agaacggagtcattgccttccttgcctgccttctggtgcgggctaccagctctccccag 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 937
Length adjustment: 10
Effective length of query: 533
Effective length of database: 927
Effective search space: 494091
Effective search space used: 494091
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_o13.g1 MSMg01no270_o13.g1 CHROMAT_FILE:
MSMg01no270_o13.g1 PHD_FILE: MSMg01no270_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:41 2005
(666 letters)
>mm_chr19_5743710_5744775
Length = 1066
Score = 928 bits (480), Expect = 0.0
Identities = 520/540 (96%), Gaps = 12/540 (2%)
Strand = Plus / Minus
Query: 133 gcagtggggagtaggggatttccagatctaaaccatgtctattctcaagacatgggtaca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gcagtggggagtaggggatttccagatctaaaccatgtctattctcaagacatgggtaca 1007
Query: 193 ggagggggacaaggaaagagtcgggggcaggttcagcaactccggattggccgggctgtg 252
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 1006 ggagggggacaaggaaagagtcgggggcaggttcagcgactccggattggctgggctgtg 947
Query: 253 ggtgctggggagattttctgacttttccccagc------tttttttctcacaaacacctg 306
||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 946 ggtgctggggagattttctgacttttccccagccaccaa------tcttacaaacacctg 893
Query: 307 gacgactgtgggcattagcaggaggctccctgtgccccaggccttgcttcacaggcctgt 366
|| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 892 gatgactgtgggcatcagcaggcggctccctgtgccccaggccttgcttcacaggcctgt 833
Query: 367 gtgtctgtcctggagctcactgtgtgtgtgtctcaggcaaagttctagcagagaagaccc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gtgtctgtcctggagctcactgtgtgtgtgtctcaggcaaagttctagcagagaagaccc 773
Query: 427 cttcccccttcactcatcttacttttctactccctgtcttacatttgaggccatgttcca 486
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 772 cttcccccttcactcatcttacttttctactccctgtcttacgtttgaggccatgttcca 713
Query: 487 gaaccttctttgactccaactccctctgttcagcccctgtacacccctgcctaggaccta 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gaaccttctttgactccaactccctctgttcagcccctgtacacccctgcctaggaccta 653
Query: 547 cctatccaccctttaccagtgcgccagtgttctcatggttatagcctatctgtccctata 606
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cctatccaccctttaccagtgtgccagtgttctcatggttatagcctatctgtccctata 593
Query: 607 ttcctgactccttgccagttgcttcatgtcctgatctgattctgggccgtgtctctccca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttcctgactccttgccagttgcttcatgtcctgatctgattctgggccgtgtctctccca 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
