Query= MSMg01no270_o19.b1 MSMg01no270_o19.b1 CHROMAT_FILE:
MSMg01no270_o19.b1 PHD_FILE: MSMg01no270_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:42 2005
(603 letters)
>mm_chr19_25516340_25517343
Length = 1004
Score = 1046 bits (541), Expect = 0.0
Identities = 586/601 (97%), Gaps = 1/601 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttttgacttcgctagtaagtggcaaattcctttaactttgttatcaaatcttc 63
|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 804 ggaattcttttgactttgttagtaagtggcaaattcctttaactttgttattaaatcttc 745
Query: 64 tatgccagcttcttttttgacccccactgcaacagtcaggcatcctggcatggccccaaa 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 744 tatgccagcttcttttttgacccccactgcaacagtcaggcatactggcatggccccaaa 685
Query: 124 ccttgcaagacaggtcaggctgctgttggctatcacaggat-agggggatgcctgtctgt 182
|||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 684 cctttcaagacaggttaggctgctgttggctattacaggataagggggatgcctgtctgt 625
Query: 183 ctcctcctagagacggagccagccttgctaattaggagcacctcaaggaagtttcatggg 242
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 ctcctcctagagacggagccagccttactaattaggagcacctcaaggaagtttcatggg 565
Query: 243 caagaatgcagaacccattttggaccttttccctgttataggccccaggaagtagcaatg 302
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 caagaatgcagaacccattttggaccttttccctattataggccccaggaagtagcaatg 505
Query: 303 gcttgcagtaagaatgatccttatccaagagctgaggggacccggctgtgactcgctacc 362
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||
Sbjct: 504 gcttgcagtaagaatgatccttagccaagagctgaggggacccagctgtgacttgctccc 445
Query: 363 ctatgattctgtcacagaggctgtggtggtctgactaccctaagcttaatgctgtcgact 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctatgattctgtcacagatgctgtggtggtctgactaccctaagcttaatgctgtcgact 385
Query: 423 cctcgatgagaatgtgatagagaagtctagttttaccctccgtgttctccacctcagggc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctcgatgagaatgtgatagagaagtctagttttaccctccgtgttctccacctcagggc 325
Query: 483 accctctgaactggctcctgagactctatggttaggtgcttctctcagcttgtgttacca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accctctgaactggctcctgagactctatggttaggtgcttctctcagcttgtgttacca 265
Query: 543 caacagtgtctaagtggctgccttcccaatcttccattcacattcaggcacagctcgcct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caacagtgtctaagtggctgccttcccaatcttccattcacattcaggcacagctcgcct 205
Query: 603 c 603
|
Sbjct: 204 c 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_o19.g1 MSMg01no270_o19.g1 CHROMAT_FILE:
MSMg01no270_o19.g1 PHD_FILE: MSMg01no270_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:42 2005
(273 letters)
>mm_chr19_25351828_25352500
Length = 673
Score = 474 bits (245), Expect = e-138
Identities = 266/273 (97%)
Strand = Plus / Plus
Query: 1 tgggtctggtggcacgtctgagaacagtggcccaggtctttgcggattgtggcagttgtc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 201 tgggtctggtggcacgtctgagaacagtggcccaggtctttgcggattgtggtagttctc 260
Query: 61 accattgttccccaacctgtggtagggtcttcccaacccctgggtctttgtcaccaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accattgttccccaacctgtggtagggtcttcccaacccctgggtctttgtcaccaggta 320
Query: 121 gacgttcctcacttctcagtctcctgtagccattcacaaccccacatgtatggaatggga 180
|| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 321 gaagttcctcacttctcagtctcctgtagccattcacaaccccgcatgtacggaatggga 380
Query: 181 gctattctgtgtgtctgcgttcctgtctccaggcactctgtcagacatctgcattttaat 240
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gctattctgtgtgtctgcattcctgtctccaggcactttgtcagacatctgcattttaat 440
Query: 241 aatatgggtcagcacattttattttggcaaccc 273
|||||||||||||||||||||||||||||||||
Sbjct: 441 aatatgggtcagcacattttattttggcaaccc 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
