Query= MSMg01no271_c15.b1 MSMg01no271_c15.b1 CHROMAT_FILE:
MSMg01no271_c15.b1 PHD_FILE: MSMg01no271_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:59 2005
(687 letters)
>mm_chr19_56242940_56244026
Length = 1087
Score = 1122 bits (580), Expect = 0.0
Identities = 637/668 (95%), Gaps = 19/668 (2%)
Strand = Plus / Minus
Query: 20 cactgtggtcaagaggttgcaggagtctcctggaagggtgggctgcatttgatttgactt 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cactgtggtcaagaggttgcaggagtctcctggaagggtgggctgcatttgatttgactt 627
Query: 80 catgaagatgaatggctgagaagagtgatggttagaaatgatgaagatgtggtcatgcct 139
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 626 catgaagatgaacggctgagaagagtgatgattagaaatgatgaagatgtggtcatgcct 567
Query: 140 tggagatgtggtcatgccatggagatgtggtcatgccttggagatgtggtcatgccatgg 199
| |||||| |||||||||| ||||||||||||||||||||||
Sbjct: 566 tagagatggggtcatgcca-------------------tggagatgtggtcatgccatgg 526
Query: 200 agatgtggtcatgtcttggagatggggtcatgccatgagcatggttaactgccctgttta 259
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aaatgtggtcatgtcttggagatggggtcatgccatgagcatggttaactgccctgttta 466
Query: 260 caaacacactgttctccaaaggcctcaatgtctttccagaagaagaacaaactcctaatg 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 465 caaacacactgttctccaaaggcctcaatgtctttccagaagaagaacaaactcctaaag 406
Query: 320 gggtaattttcccttattataacttcaagtgagttctacattaattaagaatttctgtct 379
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggtaattttccattattataacttcaagtgagttctacattaattaagaatttctgtct 346
Query: 380 cttgggcagtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggccgat 439
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 345 cttgggcagtggtggtgcacgcctttaatcccagcacttgggaggcagagacaggccgat 286
Query: 440 ttctgagtttgaggccagcctggtctacaaagtgagttccaggacaggcagggctacaca 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttctgagtttgaggccagcctggtctacaaagtgagttccaggacaggcagggctacaca 226
Query: 500 gagaaaccctgtctcaaaaaaccaaaaaaccaaaccaaaacaaaaaagcatgtctgtctc 559
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 225 gagaaaccctgtctcaaaaaaccaaaaaaccaaaccaaaacaaaaaagcatttctgtctc 166
Query: 560 ttactttgcccaccaaaaccacaaagcaaaacaacaagaagcatggattcgactaaaaca 619
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tttctttgctcaccaaaaccacaaagcaaaacaacaagaagcatggattcgactaaaaca 106
Query: 620 agattacatttgaaatctagtttcaggaactaattagttatgtgtgcttgaataagtaac 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 agattacatttgaaatctagtttcaggaactaattagttatgtgtgcttgaataagtaac 46
Query: 680 ttaatgtc 687
||||||||
Sbjct: 45 ttaatgtc 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_c15.g1 MSMg01no271_c15.g1 CHROMAT_FILE:
MSMg01no271_c15.g1 PHD_FILE: MSMg01no271_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:59 2005
(618 letters)
>mm_chr19_56165956_56166973
Length = 1018
Score = 1133 bits (586), Expect = 0.0
Identities = 610/618 (98%)
Strand = Plus / Plus
Query: 1 cacccctccatctagcaaagggaggtctcctctacataccgcagggcgtcttcaagccaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cacccctccatctagcaaagggaggtctcctctacattccgcagggcgtcttcaagccaa 260
Query: 61 gtgactcacagcacgcatgctctctggatctatgccacacatatggtcaggcaaaccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgactcacagcacgcatgctctctggatctatgccacacatatggtcaggcaaaccaga 320
Query: 121 accaattggatagtcatcaaggaacctagagtctggacctttgaaacctaagccagggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaattggatagtcatcaaggaacctagagtctggacctttgaaacctaagccagggcc 380
Query: 181 ctgacctgagtgttaagtcagtgcctttcggggtttctttcaagtgggagatgtgaaata 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacctgagtgctaagtcagtgcctttcggggtttctttcaagtgggagatgtgaaata 440
Query: 241 tgggattgaaagggcctatgatctatggtcctgtgagccatggtcctgctagccatggac 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tgggattgaaagggcctatgatctatggtcctgtgagccatggtcctgcgagccatggac 500
Query: 301 ctgtgatctttgggcctgtgagtcatgagcctgtgatctgtgggctcatgagttctatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgatctttgggcctgtgagtcatgagcctgtgatctgtgggctcatgagttctatgg 560
Query: 361 tcttctgagaagttactgagccttccctgctataagaggagagagaaccagtcaggagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttctgagaagttactgagccttccctgctataagaggagagagaaccagtcaggagac 620
Query: 421 tgaggatccagccaccatgcagacaatgccttcttttcagctgggtccccctcaaatgac 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 621 tgaggatccagccaccatgcagacactgccttcttttcagctgggtccccctcaaatggc 680
Query: 481 atcagaggtcaggttcccctccacccccaccccaggctgctttttctgaagctatgggcc 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 atcagaggtcaggttcccctccacccccaccccaggctgctttttctgaaactatgggcc 740
Query: 541 tctcatgtcagtcataagcattaacacaatcttaaagtatttctaatgtttatttttagt 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 tctcatgtcagtcataagcattaacacaaccttaaagtatttctaatgtttatttttagt 800
Query: 601 atgtgtatacgtatgtgt 618
||||||||| ||||||||
Sbjct: 801 atgtgtatatgtatgtgt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
