Query= MSMg01no271_g05.b1 MSMg01no271_g05.b1 CHROMAT_FILE:
MSMg01no271_g05.b1 PHD_FILE: MSMg01no271_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:15 2005
(308 letters)
>mm_chr19_36656713_36657421
Length = 709
Score = 516 bits (267), Expect = e-151
Identities = 296/311 (95%), Gaps = 12/311 (3%)
Strand = Plus / Minus
Query: 1 atgatttaaggagactgaaaaac--ttgtttctgctgctatattcacagaatctagcact 58
||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 541 atgatttaaggagactgaaaaacttttgtt-----tg----attcacagaatctagcact 491
Query: 59 tgccctttttt-atcttagaaaaataggaaaattctctcacaactccattagcaaatttt 117
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgcccttttttaatcttagaaaaataggaaaattctctcacaactccattagcaaatttt 431
Query: 118 acctaactttccctgtagtactttgtatttttataattggggaacttgcaatttaaatct 177
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 430 acctaactttccctgtagtactttgtatttttataatcggggaacttgcaatttaaatct 371
Query: 178 cttttattgtgtttttcttcacggaaacatacgtagacactaagaacaatgttcagtgag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cttttattgtgtttttcttcacggaaacatacgtagacactaagaacaatgttcagtgag 311
Query: 238 taataaatgagcttcagagtactcacaccatcaacagattaattgactggtaagagttga 297
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 310 tagtaaatgagcttcagagtactcacgccatcaacagattaattgactggtaagagttga 251
Query: 298 atgggatatta 308
|||||||||||
Sbjct: 250 atgggatatta 240
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space: 209300
Effective search space used: 209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_g05.g1 MSMg01no271_g05.g1 CHROMAT_FILE:
MSMg01no271_g05.g1 PHD_FILE: MSMg01no271_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:15 2005
(485 letters)
>mm_chr19_36519382_36520266
Length = 885
Score = 770 bits (398), Expect = 0.0
Identities = 453/486 (93%), Gaps = 26/486 (5%)
Strand = Plus / Plus
Query: 1 tatttacctatgtgtatatatagttatagtttattatataattcagattgaataatatta 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tatttacctatgtgtatatatagttatagtttactatataattcagattgaataatatta 260
Query: 61 tttaggagcataagaaattagaagcattagtttgggaaagagaagaaatgagttcctcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tttaggagcataagaaattagaagcattagtttgggaaagagaagaaatgagttcctctt 320
Query: 121 tattctccagcacttaaaaatccacccaagtacaagaccagtgtctgtgttctatatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattctccagcacttaaaaatccacccaagtacaagaccagtgtctgtgttctatatttt 380
Query: 181 gaaggtgagtttttaagtccatctataagtatgtccaggattctgctagcctagagcata 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gaaggtgagtttttaagtccatctataagtatgtccaggattctgctagcctagagcaga 440
Query: 241 ggaggtgtgtactgcaagcccgtgtaagctacagtgtgaaagtgggaagtgcggccagat 300
||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 441 ggaggtgtgta---------------agctacagtgtgaaagtgggaagtggggccagat 485
Query: 301 agaccatgctgcccagagaatggacagatccaggaggagtgggaggactgttggggtcgg 360
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaccacgctgcccggagaatggacagatccaggaggagtgggaggactgttggggtcgg 545
Query: 361 ggagggattgcatgatccatcactaaagagtaatgtcaggcttgaggaaagaggcttagt 420
| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 546 g-agggattgcatgatccatcactaaagag---------gcttgaggaaagagccttagt 595
Query: 421 gggg-tctctgctgccagaaggagattactctgccttaggccttagagatgagggaggaa 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gggggtctctgctgccagaaggagattactctgccttaggccttagagatgagggaggaa 655
Query: 480 atgttc 485
||||||
Sbjct: 656 atgttc 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
