BAC Information

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BAC

Clone NameMSMg01-271I15
Chromosome19 (Build37)
Map Location 45,895,530 - 45,895,858
singlet/doubletsinglet
Overlap gene9130011E15Rik
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2
Downstream geneEG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271I15.T7 (MSMg01no271_i15.b1)MSMg01-271I15.TJ (MSMg01no271_i15.g1)
ACCAG411063AG411064
length740747
length of high quality
(start - end)
215 (431 - 645)333 (379 - 711)
definitionCHROMAT_FILE: MSMg01no271_i15.b1 PHD_FILE: MSMg01no271_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005CHROMAT_FILE: MSMg01no271_i15.g1 PHD_FILE: MSMg01no271_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGCGGAAT
TCCGGTTTTCCAAAAAACCTTTTCCTCCCGGTTCAGTTCTAGGACCCTTT
CCTCTTGCCATGACTCTCCTTCCTGAGTTTCCTCCTGGCAGCCTCCCTCT
CTTCCTTCTGTTCTCTTGGCTTCTAGAAATTCCTGCTAGTGAACATTTGA
CGGGTGAAGCTGGCAGTGACAAGAGATGCCCACCAGGAGGCGCCAGTGCC
TAAGAAGATGCTGAAGCCCTGTATGGAGGCTCCTGCCTGCAGAGGCTGAA
GTCCTGCGCCTTTTTGTTTACACAAGGAGTTCCAGGCCAGCGTGGGCTAC
TTTGGATGNATTCCCTNAGCGGNNCACATTGTTGTTGCTGTTGCAGAGAA
CCTGAGTTGGGTTTCTAAAAAAAATGACTAGTGCTCACAGTTAACTCTAA
CTTTAGTTCCAGGGAATCTCAGATGCTCTTCCCACCTCTGAGAGGACATT
TGTATATATGTGGTGTACACACACACACACACACACACACAAATAAAAAG
TAATTTTTTAAGATATCTGTAACCCAATTTGCAAAACACATGAAACTCAA
GAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGTTA
ACAAAACACCCATGGAAGGAGTTACAGAGACGAAGTTTGGAGCTGAGACA
AAAGGATGGACCATCTAGTGACTGCCATATCCAGGGATTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTATCCTCTGGCCCCTGCCTCCCAAGTGCT
GATATTATAGGCATGCACCCCCATGCCCAGCTTCTAGGACCACCTTTGAA
TCTCTTCCGTTCCCTGCCTTTCCTGACCAGACCAGCCTGGACATAAAGAC
CTATATACTGTGGCTATGGTCGCCACTGTCCCTGACACCGCCAGTGTACG
CTTAGCCTCTGCATATGGCTTCCTCTGGTCAGGTACTGAGTATGCCTAAG
TGCTTCTCCCTTCCTGGAAACCATCTTTCTTCAGCCCTGGGATGTTCCTT
AGCACCATTTGTTTCTTGCCCTCACCTCTCAATGCCAGCCCATCATTCTT
ATCCACCTTCCGGAACAAACTTTTGAGTATCCAAGCACTGAGTTACAGTG
GACACTGACGGGGCGAAGGGGTGTGCATCTCCTCAACAATGCTGCTCGCT
CTGACTTTTGTTTTTGAGACAGGGTCTTGCTATATAGTCTAGGCTGGCCT
GAAACTCACTACATGGCTCTGTTTGGTCTATAATTTTTTATCTTCCTGTC
TCACCTCTTGATATCTGGGCTTATAAGTGTCTACTACCACACTTGACCCT
CTTGGCCTGATTCTCTATGGTGTAAGGAGTCAAAATTCAAATGACTTTGG
GATCCCTGGATATCTGAGGTTAATAATATACAGTCTGACAGCCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_i15.g1 MSMg01no271_i15.g1 CHROMAT_FILE:
MSMg01no271_i15.g1 PHD_FILE: MSMg01no271_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:26 2005
         (333 letters)



>mm_chr19_45895330_45896062
          Length = 733

 Score =  588 bits (304), Expect = e-172
 Identities = 325/334 (97%), Gaps = 6/334 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaatgccagcccatcattcttatccaccttccggaacaaacttttgagtatccaagcac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcaatgccagcccatcattcttatccaccttctggaacaaacttttgagtatccaagcac 260

                                                                       
Query: 61  tgagttacagtggacactgacggggcgaaggggtgtgcatctcctcaacaatgctgctcg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 261 tgagttacagtggacactgacggggcgaaagggtgtgcatctcctcaacaatgctgctc- 319

                                                                       
Query: 121 ctctgacttttgtttttgagacagggtcttgctatatagtctaggctggcctgaaactca 180
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ---tgacttttgtttttgagacagggtcttgctatatagtctaggctggcctgaaactca 376

                                                                       
Query: 181 ctacatggctctgtttggtctataattttttatcttcctgtctcacctcttgatatctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctacatggctctgtttggtctataattttttatcttcctgtctcacctcttgatatctgg 436

                                                                       
Query: 241 gcttataagtgtctactaccacacttgaccct-cttggcctgattctctatggtgtaagg 299
           |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 437 gcttataagtgtctactaccacacttgacc-tacttggcctgattctctatggggtaagg 495

                                             
Query: 300 agtcaaaattcaaatgactttgggatccctggat 333
           ||||||||||||||||||||||||||||||||||
Sbjct: 496 agtcaaaattcaaatgactttgggatccctggat 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)