Query= MSMg01no271_p19.b1 MSMg01no271_p19.b1 CHROMAT_FILE:
MSMg01no271_p19.b1 PHD_FILE: MSMg01no271_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:00 2005
(320 letters)
>mm_chr19_30898769_30899490
Length = 722
Score = 503 bits (260), Expect = e-147
Identities = 312/353 (88%), Gaps = 38/353 (10%)
Strand = Plus / Minus
Query: 5 gaattctctacaggttattgttgaaatattccccagtactagaagtgtatgctcatacaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaattctctacaggttattgttgaaatattccccagtactagaagtgtatgctcatacaa 404
Query: 65 aagct----------------------aaaaaaaaaaaacaaaaaaac----aacaaacc 98
||||| |||||||||||| |||||||| ||||||||
Sbjct: 403 aagctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaacaaacc 344
Query: 99 cccaaaatggatgaatggcagtacctgttctttttacaaatttgcttttagttacattta 158
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 343 cccaaaatggatgaatggcagtacctgttctttttgcaaatttgcttttagttacattta 284
Query: 159 gttatctattccta------------gtgtgtgtgtgtgtgtgtagcatgaagccatggt 206
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 283 gttatctattcctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcatgaagccatggt 224
Query: 207 actcctagtggacaaataacaactcttgggagtctgttgtctccatcatgtgggtcccaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 actcctagtggacaaataacaactcttgggagtctgttgtctccatcatgtgggtcccaa 164
Query: 267 agattgaacccaggtccttagacaagtacatttacttagacaggncctttgtc 319
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 163 agattgaacccaggtccttagacaagtacatttacttagacaggtcctttgtc 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space: 221743
Effective search space used: 221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_p19.g1 MSMg01no271_p19.g1 CHROMAT_FILE:
MSMg01no271_p19.g1 PHD_FILE: MSMg01no271_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:00 2005
(668 letters)
>mm_chr19_30764448_30765515
Length = 1068
Score = 1160 bits (600), Expect = 0.0
Identities = 651/668 (97%)
Strand = Plus / Plus
Query: 1 aaaagcaaatagttcttgcaaggctaaaatccaacttttgggccaaatgctccaaaattt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcaaatagctcttgcaaggctaaaatccaacttttgggccaaatgctccaaaattt 260
Query: 61 tcttgcttcctaccatttactctgcaataaaatggaaaataattttgattgccagactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgcttcctaccatttactctgcaataaaatggaaaataattttgattgccagactct 320
Query: 121 gggactatcctctgatggctcaacctgcaagtggtcaaaaagttctaattctggtctgag 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gggactatcctctgatggctcaacctgcaagtggtcagaaagttctaattctggtctgag 380
Query: 181 gccgcttgcaggattctttaatcagtgtggcattctcctttgggaacaggatattgctcg 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 381 gccgcttgcaggattctttaatcagtgtggcattctcctttgggaacaagatattgcttg 440
Query: 241 cttgaattctttccacaggggaagaaacaattttctaggcccatttccctgataattgct 300
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 441 cttgaattctttccacaggagaagatacaattttctaggcccatttccctgagaattgct 500
Query: 301 tacatcaagactgagttgtttaaagtaaattgttgataagattgtgggaatgccgagatc 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatcaagactgagttgtttaaagtaaattgttgataagattgtgggaatgccgagatc 560
Query: 361 tttattcctagaggcctgatataatctaataaaaaaggaggtgggggaagagacccagat 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tttattcctagaggcctgatataatctaataaaaaatgaggtgggggaagagacccagat 620
Query: 421 ttcaaagtctgtgttcaaaagagcagctacttgtgaactggattgtacatttgaaatcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaaagtctgtgttcaaaagagcagctacttgtgaactggattgtacatttgaaatcat 680
Query: 481 atttttattagatgccagatgaccccaagggcatttcaaaacaggctaccaaggagtcca 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 681 atttttattagatgccagatgaccccaagggcatttcaaaacaagctaccaaggaatcca 740
Query: 541 gcgctgggttctaatttgcacggcctcttgtgcctctgaaggcatttgatgagttaatgg 600
|| ||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 gcactgggttatgatttgcatggcctcttgtgcctctgaaggcatttgatgcgttaatgg 800
Query: 601 tcaaagggccgaggaagatctgatgccagagaaacaaggagaaacagcagcaacctccct 660
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaaagggctgaggaagatctgatgccagagaaacaaggagaaacagcagcaacctccct 860
Query: 661 atgacaaa 668
||||||||
Sbjct: 861 atgacaaa 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|