BAC Information

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BAC

Clone NameMSMg01-271P19
Chromosome19 (Build37)
Map Location 30,764,648 - 30,899,231
singlet/doubletdoublet
Overlap genePrkg1
Upstream geneMlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1
Downstream geneLOC625995, Cstf2t, 8430431K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271P19.T7 (MSMg01no271_p19.b1)MSMg01-271P19.TJ (MSMg01no271_p19.g1)
ACCAG411390AG411391
length766744
length of high quality
(start - end)
320 (39 - 358)668 (72 - 739)
definitionCHROMAT_FILE: MSMg01no271_p19.b1 PHD_FILE: MSMg01no271_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:00 2005CHROMAT_FILE: MSMg01no271_p19.g1 PHD_FILE: MSMg01no271_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,898,879 - 30,899,231)(30,764,648 - 30,765,315)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TACAGGTTATTGTTGAAATATTCCCCAGTACTAGAAGTGTATGCTCATAC
AAAAGCTAAAAAAAAAAAACAAAAAAACAACAAACCCCCAAAATGGATGA
ATGGCAGTACCTGTTCTTTTTACAAATTTGCTTTTAGTTACATTTAGTTA
TCTATTCCTAGTGTGTGTGTGTGTGTGTAGCATGAAGCCATGGTACTCCT
AGTGGACAAATAACAACTCTTGGGAGTCTGTTGTCTCCATCATGTGGGTC
CCAAAGATTGAACCCAGGTCCTTAGACAAGTACATTTACTTAGACAGGNC
CTTTGTCNNNTTTTTTTCCCCCAACTTCCTCAACTTCACTTTGTAGCATT
TATTCCCATCTCTTCTCTCAAACAAACAATAACAAATTCCTCCCCTCAGG
GGTGAGAAGCCCTATTAAGCACCACCCTATCCTGAGACATCTAGCCCCTG
CATCCTTTCCTGCTGAGGTCCAATCAGACAGCCTAGTGAGAGGAAGGGGA
TCCGATGGCAGGCAACAGAGTTAGAGACGGTCCTCCCTCTAATTGTTAGG
CTACCTACATGCAGACAAAGCTTCACATCTGCTAGAAATGTGTAAGGGCC
CTCAGTTCAGCCCCTGCATGCTTTCCTTTAATGTTTCTGCTCATTGCACG
TGAGCTTTGATTGTGAGCTCAGAGAGCTCAAAAGCATCCATGTAAGTAAT
ACTATGTTTGTACCCA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAAGCAAATAGTTCTTGCAAGGCTAAAA
TCCAACTTTTGGGCCAAATGCTCCAAAATTTTCTTGCTTCCTACCATTTA
CTCTGCAATAAAATGGAAAATAATTTTGATTGCCAGACTCTGGGACTATC
CTCTGATGGCTCAACCTGCAAGTGGTCAAAAAGTTCTAATTCTGGTCTGA
GGCCGCTTGCAGGATTCTTTAATCAGTGTGGCATTCTCCTTTGGGAACAG
GATATTGCTCGCTTGAATTCTTTCCACAGGGGAAGAAACAATTTTCTAGG
CCCATTTCCCTGATAATTGCTTACATCAAGACTGAGTTGTTTAAAGTAAA
TTGTTGATAAGATTGTGGGAATGCCGAGATCTTTATTCCTAGAGGCCTGA
TATAATCTAATAAAAAAGGAGGTGGGGGAAGAGACCCAGATTTCAAAGTC
TGTGTTCAAAAGAGCAGCTACTTGTGAACTGGATTGTACATTTGAAATCA
TATTTTTATTAGATGCCAGATGACCCCAAGGGCATTTCAAAACAGGCTAC
CAAGGAGTCCAGCGCTGGGTTCTAATTTGCACGGCCTCTTGTGCCTCTGA
AGGCATTTGATGAGTTAATGGTCAAAGGGCCGAGGAAGATCTGATGCCAG
AGAAACAAGGAGAAACAGCAGCAACCTCCCTATGACAAACAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_p19.b1 MSMg01no271_p19.b1 CHROMAT_FILE:
MSMg01no271_p19.b1 PHD_FILE: MSMg01no271_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:00 2005
         (320 letters)



>mm_chr19_30898769_30899490
          Length = 722

 Score =  503 bits (260), Expect = e-147
 Identities = 312/353 (88%), Gaps = 38/353 (10%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctacaggttattgttgaaatattccccagtactagaagtgtatgctcatacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaattctctacaggttattgttgaaatattccccagtactagaagtgtatgctcatacaa 404

                                                                       
Query: 65  aagct----------------------aaaaaaaaaaaacaaaaaaac----aacaaacc 98
           |||||                      |||||||||||| ||||||||    ||||||||
Sbjct: 403 aagctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaacaaacc 344

                                                                       
Query: 99  cccaaaatggatgaatggcagtacctgttctttttacaaatttgcttttagttacattta 158
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 343 cccaaaatggatgaatggcagtacctgttctttttgcaaatttgcttttagttacattta 284

                                                                       
Query: 159 gttatctattccta------------gtgtgtgtgtgtgtgtgtagcatgaagccatggt 206
           ||||||||||||||            ||||||||||||||||||||||||||||||||||
Sbjct: 283 gttatctattcctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcatgaagccatggt 224

                                                                       
Query: 207 actcctagtggacaaataacaactcttgggagtctgttgtctccatcatgtgggtcccaa 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 actcctagtggacaaataacaactcttgggagtctgttgtctccatcatgtgggtcccaa 164

                                                                
Query: 267 agattgaacccaggtccttagacaagtacatttacttagacaggncctttgtc 319
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 163 agattgaacccaggtccttagacaagtacatttacttagacaggtcctttgtc 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space:   221743
Effective search space used:   221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no271_p19.g1 MSMg01no271_p19.g1 CHROMAT_FILE:
MSMg01no271_p19.g1 PHD_FILE: MSMg01no271_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:00 2005
         (668 letters)



>mm_chr19_30764448_30765515
          Length = 1068

 Score = 1160 bits (600), Expect = 0.0
 Identities = 651/668 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagcaaatagttcttgcaaggctaaaatccaacttttgggccaaatgctccaaaattt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcaaatagctcttgcaaggctaaaatccaacttttgggccaaatgctccaaaattt 260

                                                                       
Query: 61  tcttgcttcctaccatttactctgcaataaaatggaaaataattttgattgccagactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgcttcctaccatttactctgcaataaaatggaaaataattttgattgccagactct 320

                                                                       
Query: 121 gggactatcctctgatggctcaacctgcaagtggtcaaaaagttctaattctggtctgag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gggactatcctctgatggctcaacctgcaagtggtcagaaagttctaattctggtctgag 380

                                                                       
Query: 181 gccgcttgcaggattctttaatcagtgtggcattctcctttgggaacaggatattgctcg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 381 gccgcttgcaggattctttaatcagtgtggcattctcctttgggaacaagatattgcttg 440

                                                                       
Query: 241 cttgaattctttccacaggggaagaaacaattttctaggcccatttccctgataattgct 300
           ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 441 cttgaattctttccacaggagaagatacaattttctaggcccatttccctgagaattgct 500

                                                                       
Query: 301 tacatcaagactgagttgtttaaagtaaattgttgataagattgtgggaatgccgagatc 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatcaagactgagttgtttaaagtaaattgttgataagattgtgggaatgccgagatc 560

                                                                       
Query: 361 tttattcctagaggcctgatataatctaataaaaaaggaggtgggggaagagacccagat 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tttattcctagaggcctgatataatctaataaaaaatgaggtgggggaagagacccagat 620

                                                                       
Query: 421 ttcaaagtctgtgttcaaaagagcagctacttgtgaactggattgtacatttgaaatcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaaagtctgtgttcaaaagagcagctacttgtgaactggattgtacatttgaaatcat 680

                                                                       
Query: 481 atttttattagatgccagatgaccccaagggcatttcaaaacaggctaccaaggagtcca 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 681 atttttattagatgccagatgaccccaagggcatttcaaaacaagctaccaaggaatcca 740

                                                                       
Query: 541 gcgctgggttctaatttgcacggcctcttgtgcctctgaaggcatttgatgagttaatgg 600
           || ||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 gcactgggttatgatttgcatggcctcttgtgcctctgaaggcatttgatgcgttaatgg 800

                                                                       
Query: 601 tcaaagggccgaggaagatctgatgccagagaaacaaggagaaacagcagcaacctccct 660
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaaagggctgaggaagatctgatgccagagaaacaaggagaaacagcagcaacctccct 860

                   
Query: 661 atgacaaa 668
           ||||||||
Sbjct: 861 atgacaaa 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)