BAC Information

Click to search

BAC

Clone NameMSMg01-272D05
Chromosome19 (Build37)
Map Location 55,620,184 - 55,804,891
singlet/doubletdoublet
Overlap geneVti1a
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, LOC100043479
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272D05.T7 (MSMg01no272_d05.b1)MSMg01-272D05.TJ (MSMg01no272_d05.g1)
ACCAG411551AG411552
length756756
length of high quality
(start - end)
322 (40 - 361)298 (68 - 365)
definitionCHROMAT_FILE: MSMg01no272_d05.b1 PHD_FILE: MSMg01no272_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:17 2005CHROMAT_FILE: MSMg01no272_d05.g1 PHD_FILE: MSMg01no272_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,620,184 - 55,620,501)(55,804,596 - 55,804,891)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTGGCTTGCTGCAGCAAGAGGCAGATAGAGGGCGCTGTGGAGCTCTCGTG
AACAGTGTTCACTTCTAGCTCACCAGCTGAATGAGCCTAGCTTCCGCAGA
CAAGGCTAACACAGGATTGAACTGGCCAAAAAGCTGCTCAAACAGAAATA
TTGTACCTTAAAGTACTACTAAAGCATCAACTTGTTTGAACAGTGCTTGG
CCGTTGTAAAGCACTTGACTTACACTTTTAATTCGCTGTTCACAAGTATG
TTTTGTACTGTGCTTGGCCGTCGTAAAGCACTTGACTTACACTTTTAATT
CACTGTTCACTTTATTTCCAGCCCCTCCCCCCGCCTTTGTGTTTATGCAG
TTTTTATAACCATGACGAAAGTCAGGCCTAAAGAACTTTAGTTGTCATGC
CGGAAAGTCTGGGCCAGAGCTTCAGCTCAAATCTACGTCGCTTGGCTCCT
GTACTGTCCTGTGTGTACAGTGGTGTTCCCTGTTCCACTTTAATAGAGTA
CCGAGGGGCACTCGTCGGGAAGAAGGGAGACTTCTGCTGCTCAGCCTAAT
CACTGAGCTGTGAATAGTAGAGGCTAGAGGGAGGCTGCTTCGTGGCCAAC
ATAACAAACACTGGATCTGTCCAGCAATGAAATGTGTTGTCCTGTGAAGG
AACGAGGCCCCCTCGTGCTTGGACAACTCATTGACAGTACTCTCGTGTAT
GCTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCATGGTCTAGACATGAAGATCATCTGTAT
GTATGGGAAATATTTCCTGTGTAGTTGCTTTCTTGCTCTCATAGAGGTAC
ATGAATGGCATTTTGAAGACAGAAAACAAATCTTAACTTCCTTTGTGGCC
GGTGTTTTTGTGAAATTGTTCCTGATGGCGAAGACATTCCTAATGTGACC
ATCTAAAAAACTGGCTGTTTGTCTCTCGCGCGTGCAGATTAAATGGATTA
ATTTTGTTGTCTTTTTATTAGTTTTTAAAATCAGACCCAATATGATGCCG
GGTCCTTTGTTATTTTACCCCGCCCCCCCAGAACCAGAATAAAGTTAGAC
AAGTCTCAGCGCATGCGCGCGAAGCGCGAAACGGCGGCCGAGAACACACC
AGGACAGAGAAGACATGGGATGGAAAGAGGGCACAAGGAACAGTACATCC
CACATCCAAGTCCAAAGTCTTGCTTCTGCTCTCACCTTCGTGTCCGTTCT
AAAATCTGTTCCTCTGGTCACTGTTCTATGGAACCTCTGTCCACATCCGT
TAACATCACAGTTACAGGGCAGCCTGCTCCCAGTCAGCCCAACAAGGAAT
TCCGAAGCACATTCACACACACTGAGGTTGAGAGCGTGGACTGTGCACAG
CCAAGCCCTTGGAGCTTGCAGTCCCTCTTCCCCCTGAGATCTGCCCACAT
TTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_d05.b1 MSMg01no272_d05.b1 CHROMAT_FILE:
MSMg01no272_d05.b1 PHD_FILE: MSMg01no272_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:17 2005
         (322 letters)



>mm_chr19_55619981_55620702
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactggcttgctgcagcaagaggcagatagagggcgctgtggagctctcgtgaa 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactggcttgctgaagcaagaggcagatagagggcgctgtggagctctcgtgaa 263

                                                                       
Query: 64  cagtgttcacttctagctcaccagctgaatgagcctagcttccgcagacaaggctaacac 123
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagtgttcacttctagcttagcagctgaatgagcctagcttccgcagacaaggctaacac 323

                                                                       
Query: 124 aggattgaactggccaaaaagctgctcaaacagaaatattgtaccttaaagtactactaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggattgaactggccaaaaagctgctcaaacagaaatattgtaccttaaagtactactaa 383

                                                                       
Query: 184 agcatcaacttgtttgaacagtgcttggccgttgtaaagcacttgacttacacttttaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcatcaacttgtttgaacagtgcttggccgttgtaaagcacttgacttacacttttaat 443

                                                                       
Query: 244 tcgctgttcacaagtatgttttgtactgtgcttggccgtcgtaaagcacttgacttacac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcgctgttcacaagtatgttttgtactgtgcttggccgtcgtaaagcacttgacttacac 503

                             
Query: 304 ttttaattcactgttcac 321
           ||||||||||||||||||
Sbjct: 504 ttttaattcactgttcac 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no272_d05.g1 MSMg01no272_d05.g1 CHROMAT_FILE:
MSMg01no272_d05.g1 PHD_FILE: MSMg01no272_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:17 2005
         (298 letters)



>mm_chr19_55804396_55805094
          Length = 699

 Score =  526 bits (272), Expect = e-154
 Identities = 290/296 (97%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcatggtctagacatgaagatcatctgtatgtatgggaaatatttcctgtgtagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttttcatggtctagacatgaagatcatctgtatgtatgggaaatatttcctgtgtagttg 437

                                                                       
Query: 61  ctttcttgctctcatagaggtacatgaatggcattttgaagacagaaaacaaatcttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctttcttgctctcatagaggtacatgaatggcattttgaagacagaaaacaaatcttaac 377

                                                                       
Query: 121 ttcctttgtggccggtgtttttgtgaaattgttcctgatggcgaagacattcctaatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 376 ttcctttgtggccggtgtttttgtgaaattgttcctgatggcgaagacattcctagtgtg 317

                                                                       
Query: 181 accatctaaaaaa-ctggctgtttgtctctcgcgcgtgcagattaaatggattaattttg 239
           |||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 316 accaactaaaaaaactggctgtttgtctctctcgtgtgcagattaaatggattaattttg 257

                                                                   
Query: 240 ttgtctttttattagtttttaaaatcagacccaatatgatgccgggtcctttgtta 295
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 256 ttgtctttttattagtttttaaaatcagacccaatgtgatgccgggtcctttgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 699
Length adjustment: 9
Effective length of query: 289
Effective length of database: 690
Effective search space:   199410
Effective search space used:   199410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)