BAC Information

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BAC

Clone NameMSMg01-272F06
Chromosome19 (Build37)
Map Location 24,798,095 - 24,798,415
singlet/doubletsinglet
Overlap genePgm5
Upstream geneApba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik
Downstream geneLOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F06.T7 (MSMg01no272_f06.b1)MSMg01-272F06.TJ (MSMg01no272_f06.g1)
ACCAG411644AG411645
length774763
length of high quality
(start - end)
321 (38 - 358)286 (66 - 351)
definitionCHROMAT_FILE: MSMg01no272_f06.b1 PHD_FILE: MSMg01no272_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:27 2005CHROMAT_FILE: MSMg01no272_f06.g1 PHD_FILE: MSMg01no272_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
CCCCCTTCCCCACCCCCCAGGCATCCTCCATCACTCACAGGCAGATCTCA
TCAACACTGCCTCTCAAGCTGAAGTTCAGAGTAGTTCAAGAATATATCTA
CAGGCAAGCATCTGGGCCGTGACAAATACAGCCTTTAAGCCTGGGTCCAT
CTGATTTCAAACAATAGAACAGCAAAGAGGAAGTGGGTGCCAAAAAAAGA
TCACAGGAAGCTGCATCCAATAGCTGAAGAGGAGTAGAAAGCCAAAGAGG
ACCACAGATTTCTACAGAGGATTAAGATGCTGAGGAGGACAGTGAGCTGC
TTCCTATATTTCTTGTTCACCCGCGCACCCCGCGTTTTGAATACTGCTGT
TTTTCCTTATGGATATTAAATTTCTTTTCCTTATTTCCTTCCTTCCTTTC
CTTTTTTTTTTCTTTTTAAGGCAGGGTCTCACTATATGGCCCAGCTTGAC
CTAGGACTCATGATCCTCAGCTTCTTGAGTGTCAGGATTGTGTGTGTGTG
TGTGTGTGTGTGTAAAAGAGAGACCGACTGACTGACAGACCGACAGACTG
ACTGATTATTACTGGGCTCTGCTTTTATCTTAATTTTGTTCCCAGTTATA
GTATGTTTTTCTAAAGCAACAGTTATTTAATGATGAAAAGATACCGTAAC
AAATTGTTATCGGGTACCCTCATTTTCTGTTTGGTGAGTAAATTATGTTG
TTGGAACTTGCGTTTGAAGTCCCT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGTCTCCTCCTGGCTGCCTTCAGATCAAGATGTA
TAACTTTGGGCTCCTCCAGCACCACATCTGTTTGCACACTGCCATGTTTC
CTGCCATGATGATACCTCTGAACCTGTAAGCCACCCCCAGTTAAGTGTTC
TCCTTTATAAGAGTGGCCTTGGCTGAGGTGTCTCTTCACAGCAATGGATG
CCAACTAAGACACCTTGCTTATCACGTGGGGGTGACCTCAGGTACTCATG
TTTACAATGGAAGCACTTTACCAACTGAGCTATCTCCCCAGTCTTTAGGG
AGTCTTTAATATTTACCCTTCATCGCCCTTAAATGGAGCTACTTATTTAT
TCCTTCTGGAAAGGAGACAAAAAAAACTTTCCTTCTTTTCACACTGATCA
CTCTGGAGCAGGTATCTGGTAAAATAGCCACCCCCACAACTGAAGTTTAT
GACAACTCAATGTGTGTCGCTTTTGGTTTTTGGCAATGCACCAGGAAATC
TTGGATTTTTATGCAGTCAAATTTCACTGTATAAATTAATAAATATTAGA
ATATACGTTTCTTTTTGCTTTCTAACCTTCAATCTTCAATGGTAAAAGAA
CCCAAACTTTTTGCGGTCGTTGCATAATTGCTCTTAACCTTGATCTTTAT
TTTCTTCTTCTCTCAATTTTATTTTTTCAACGTATGTTATCTTACATCAC
TTATAATCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f06.b1 MSMg01no272_f06.b1 CHROMAT_FILE:
MSMg01no272_f06.b1 PHD_FILE: MSMg01no272_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:27 2005
         (321 letters)



>mm_chr19_24797895_24798615
          Length = 721

 Score =  555 bits (287), Expect = e-162
 Identities = 311/321 (96%), Gaps = 4/321 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccccccttccccacc----ccccaggcatcctccatcactcacaggcagatc 60
           ||||||||||||||  |||| ||    |||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccaccccccacccccccctcacccccaggcatcctccatcactcacaggcagatc 260

                                                                       
Query: 61  tcatcaacactgcctctcaagctgaagttcagagtagttcaagaatatatctacaggcaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcaacactgcctctcaagttgaagttcagagtagttcaagaatatatctacaggcaa 320

                                                                       
Query: 121 gcatctgggccgtgacaaatacagcctttaagcctgggtccatctgatttcaaacaatag 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatttgggccgtgacaaatacagcctttaagcctgggtccatctgatttcaaacaatag 380

                                                                       
Query: 181 aacagcaaagaggaagtgggtgccaaaaaaagatcacaggaagctgcatccaatagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagcaaagaggaagtgggtgccaaaaaaagatcacaggaagctgcatccaatagctga 440

                                                                       
Query: 241 agaggagtagaaagccaaagaggaccacagatttctacagaggattaagatgctgaggag 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 agaggagtagaaagccaaagaggaccacagatttctacagaggaataagatgctgaggag 500

                                
Query: 301 gacagtgagctgcttcctata 321
           |||||||||||||||||||||
Sbjct: 501 gacagtgagctgcttcctata 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)