BAC Information

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BAC

Clone NameMSMg01-272P09
Chromosome19 (Build37)
Map Location 21,234,150 - 21,392,690
singlet/doubletdoublet
Overlap geneLOC100042294, LOC100041602, LOC100041613, Zfand5
Upstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
Downstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, Trpm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272P09.T7 (MSMg01no272_p09.b1)MSMg01-272P09.TJ (MSMg01no272_p09.g1)
ACCAG412099AG412100
length754761
length of high quality
(start - end)		615 (63 - 677)291 (69 - 359)
definitionCHROMAT_FILE: MSMg01no272_p09.b1 PHD_FILE: MSMg01no272_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:14 2005CHROMAT_FILE: MSMg01no272_p09.g1 PHD_FILE: MSMg01no272_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,392,342 - 21,392,690)(21,234,150 - 21,234,438)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CCTGTTACCGGTAGAAAATGCAATACTTCTGGGGCTGGGGATTTGGATAT
AGCCTCTGCTAATGGCCGAGACCTTGTCTCCTGTGTGTTTGTAGGGAGAG
GATAAGCCTACCAAAATTTGAGAGTTCAACACCCTCATTCATCTTCCACA
CATCTCCATCTCAAGTGACAGAATTACCCCACTCCTTTAAAATCCATGTC
CTCTCTTTTCACCATGCCAAGTTACAGGATCCCATTCCTTTCAAAGTCAT
GCCCTCTCTATAACTGCTGATGACCTTTGAGGCTGGGACTTAAACCTGCA
CTATAAATCTTCCAAATGTATGAGGTGGACTTGGTTTCAGCATTTATTTA
TTTATTTATTTGGTAATATTGGACCTTCAGCTTTGTTGTGAAGAAATTTC
CTCCAAAATTAAAACCTTTTGCCTTGGAGGGAAGCTCATTAAGACACAAG
ATGTTAAAAGGCAAGGTAAACACAATAGCATTGTTCTAAGAGGTAACCTT
GTTAAGACACCTGATATTTACACAGGAAGTAAACAACTCAGTAACTTCAG
GAAGTCCTTGAAACTGACCAGATTCACTAGGCCATTTTATCATATGTAAT
CATATATAAGCAGGAAGGACTCAGACTAGTCAAGCTGCCTGGAATAAGCA
GAGTTTCCAAACTCCATGAAAGAAACTCAGACCAACTGAGCTACCTGCTA
TGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGAGTACAAGGTCAGGAACTTCAGAAGTTG
AAAGAATCAAAGAAGAGCACTAATTGCTGAATCACGAGGTAATCATTAAA
CGAGAAAATAGAGACAAGAAAGGAGGGAGGAGAGAAGCTTTAATAGCTAT
TTGCCTCTACGGCACAAAATTGATGCGAAGACATTTTTATTATCTGGATC
ATCTAGGTCTTAGCCATGGTTCCCTGGCTTTCTTTGCCTGAGTAAGCCTG
AATCTAAGGCAATAAAATTGAGAAAATACCATGACCTAGGAAAAGGGGAG
ACTGTCCTTTCTTTTCCACCCCCCACCGCCGTGCTGTTCTGAACAGTTCA
CTGCCTTCGGTCAGCAAGTGCTTAGCCAGAGGCTAAGAGTGCTTCAGGCT
GTCTTCTATACAGCCTTGTCCTGGTTGTGCTGTTCCTTCAATCAGTTGTT
TAATGAGTTCATGTGCCAAGAACTGTCTCAGACTCTTTGATACATTAATG
AACAAAATAGCTAAGGTTCTCTGCCCTCCCCAAACTTACAGTCTAGCACA
TATGCAGATAAGAAAGCTATATTACTAATTCCCACAACATAAAAAGGGAG
AGGTAAGCCGGGGAGTGGGGGGCGGGTTGAGGNAANNNTTACTGNAAAAT
TAAATTGGAGTCAAGATTNTTAAGAAAGGGTAAATTTATGTGGGTGCTAT
GGACTTTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_p09.b1 MSMg01no272_p09.b1 CHROMAT_FILE:
MSMg01no272_p09.b1 PHD_FILE: MSMg01no272_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:14 2005
         (615 letters)



>mm_chr19_21392295_21393309
          Length = 1015

 Score =  629 bits (325), Expect = 0.0
 Identities = 343/349 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaatgcaatacttctggggctggggatttggatatagcctctgctaatggccgagac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 396 agaaaatgcaatacttctggggctggggatttggatatagcctctgctaatggtggagac 337

                                                                       
Query: 61  cttgtctcctgtgtgtttgtagggagaggataagcctaccaaaatttgagagttcaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cttgtctcctgtgtgtttgtagggagaggataagcctaccaaaatttgagagttcaacac 277

                                                                       
Query: 121 cctcattcatcttccacacatctccatctcaagtgacagaattaccccactcctttaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 276 cctcattcatcttccacacatctccatctcaagtgacagaattacctcactcctttaaaa 217

                                                                       
Query: 181 tccatgtcctctcttttcaccatgccaagttacaggatcccattcctttcaaagtcatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tccatgtcctctcttttcaccatgccaagttacaggatcccattcctttcaaagtcatgc 157

                                                                       
Query: 241 cctctctataactgctgatgacctttgaggctgggacttaaacctgcactataaatcttc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 156 cctctctataactgctgatgacctttgaggctgggacttaaacctgcactataaatcaac 97

                                                            
Query: 301 caaatgtatgaggtggacttggtttcagcatttatttatttatttattt 349
           ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  caattgtatgaggtggacttggtttcagcatttatttatttatttattt 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_p09.g1 MSMg01no272_p09.g1 CHROMAT_FILE:
MSMg01no272_p09.g1 PHD_FILE: MSMg01no272_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:14 2005
         (291 letters)



>mm_chr19_21233950_21234640
          Length = 691

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagtacaaggtcaggaacttcagaagttgaaagaatcaaagaagagcactaattgct 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 actgagtacaaggtcagaaacttcagaagttgaaagaatcaaagaagagtaataattgct 260

                                                                       
Query: 61  gaatcacgaggtaatcattaaacgagaaaatagagacaagaaaggagggaggagagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatcacgaggtaatcattaaacgagaaaatagagacaagaaaggagggaggagagaagc 320

                                                                       
Query: 121 tttaatagctatttgcctctacggcacaaaattgatgcgaagacatttttattatctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatagctatttgcctctacggcacaaaattgatgcgaagacatttttattatctgga 380

                                                                       
Query: 181 tcatctaggtcttagccatggttccctggctttctttgcctgagtaagcctgaatctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatctaggtcttagccatggttccctggctttctttgcctgagtaagcctgaatctaag 440

                                                            
Query: 241 gcaataaaattgagaaaataccatgacctaggaaaaggggagactgtcc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaataaaattgagaaaataccatgacctaggaaaaggggagactgtcc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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