BAC Information

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BAC

Clone NameMSMg01-273F22
Chromosome19 (Build37)
Map Location 35,226,840 - 35,227,134
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273F22.T7 (MSMg01no273_f22.b1)MSMg01-273F22.TJ (MSMg01no273_f22.g1)
ACCAG412388AG412389
length734733
length of high quality
(start - end)
320 (41 - 360)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no273_f22.b1 PHD_FILE: MSMg01no273_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:44 2005CHROMAT_FILE: MSMg01no273_f22.g1 PHD_FILE: MSMg01no273_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTTCACCCAGTTCTAAATTGCCAGGAATCAAGATTTCATGGAACTCTTT
CTTGGGTGGAAAAATAAGTGCGCTAATTTCACCAGTTAACAAGCATCTTT
GAACACCCACTGTGCAGGGAGTCCTGAGACCTGCCCAGGAAGAGAAGGAA
GTTAGATATGAAGAAACAGAAGACCACCTTATCTTTATCGTGAAGGTAAA
CAAGTCACTTATCGGGTTTATGCATTCACTGACTGAGCCACATTGATACT
AGGCACTGTGCAGTGCATATTGTTTATTGGATGTAGCAGGAATATAAAAT
AAGAGGCAGAGTTNATAAATACCANGTCCTTTGCCCATTGGGGCCAGATC
ACAAAATGGACATAGAGCTGTTGGTTTATAAAAAAAAAGATAAGGGAAGA
CTCTTAGATGACTTTGGCTGGCTATGTGGAGGAAATATGACTATGTCAGA
GGAAGGGTTTCTGGTAATGATGAGCTATCGTGGTTTTAGAGGAGAGAATG
AAGGTAACAGAAGCAAAGATGACTCCTAAGGATTTCAGTCTTATCCTTTT
TTCTTTTCCAAAAATAAAATGGCAAAAACAAAACAACTACAATAAAACCC
AACAACCAACAAAAACCAGTAGCTTCTAGAAAGTAAAGAAATAGAATTTT
AAAGTGGAGGGGGGGTGGTAAAGTAATCATATTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTTCTCCCTTTCTCCTCTTTAAGCACCT
TCTCTTTCCTGTCTATTCTCATGAGAATTGGGCATATCCTTTCTCCAACT
CATTCTGTCAAATCTTTTTCTGATTCATCACTTTGTCTGCCCCACAAGTA
GACACCATTGTCAGGGATTAAAGGTATATCTGTATTCCGGCCAGAGGGAT
CAAAGGTGGGTACTACGGGTGGTGTGTGTTTAATCCAGGATAAAGGTATA
AAGGTGTATGGTGTATCATATCCATATCATATCTTTGGATGTGATCCCTT
GCCATAAAAGCTATATTGCTGTACCAAAACGNCCTACAATCTACTCACCC
CAGGTAGGTAACTTATGACAATCCAAAGAAAAGACACCACTAAAGTCGAA
CTTGGTGAACCAATGTGTTCTCTTGGGGACTTTAAAAATATGGGTAATGG
GGTACATGTGTATAAAGGCAAGAGTCTAATGAATTTTCTCAGTCTCAGGA
ACTTCCTAAAGTTTTTGAGTTGTTTACTTCCTGATTTTAATGTGCTTTAT
ACCTATACCTCTATATATAANATATAANATTAATATAAAAATATGTAAAG
GTAGATATAGAGAATATAGGTTAATACCGATATAGACATAAAGAATCTCA
ACTAAAATGCTCTCCTCCTTTTTATCTATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_f22.b1 MSMg01no273_f22.b1 CHROMAT_FILE:
MSMg01no273_f22.b1 PHD_FILE: MSMg01no273_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:44 2005
         (320 letters)



>mm_chr19_35226616_35227334
          Length = 719

 Score =  526 bits (272), Expect = e-154
 Identities = 290/298 (97%), Gaps = 5/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 25  taaattgccaggaatcaagatttcatggaactctttcttgggtggaaaaataagtgcgct 84
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 225 taaattgccaggaatcaagatttcatggaactctttcttgggtggaaaaataagtgtgct 284

                                                                       
Query: 85  aatttcaccagttaacaagcatctttgaacacccactgtgcagggagtcctgagacctgc 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aatttcaccagttaacaagcatctttgaacacccactgtgcagggagtcctgagacctgc 344

                                                                       
Query: 145 ccaggaagagaaggaagttagatatgaagaaacagaagaccaccttatctttatcgtgaa 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccaggaagagaaggaagttagatatgaagaaacagaagaccaccttatctttatcgtgaa 404

                                                                       
Query: 205 ggtaaacaagtcacttatcgggtttatgcattcactgactgagccacattgatactaggc 264
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 405 ggtaaacgagtcacttatcgggtttatgcattcactgactgagtcacattgatactaggc 464

                                                                     
Query: 265 actgtgcagtgcatattgttt--attggatgtagcaggaatataaaataagaggcaga 320
           ||||||||||||||||||     |||||||||||||||||||||||||||||||||||
Sbjct: 465 actgtgcagtgcatattg---ggattggatgtagcaggaatataaaataagaggcaga 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)