BAC Information

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BAC

Clone NameMSMg01-273J09
Chromosome19 (Build37)
Map Location 53,018,917 - 53,019,157
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042936, Ins1, LOC100043450
Downstream geneXpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273J09.T7 (MSMg01no273_j09.b1)MSMg01-273J09.TJ (MSMg01no273_j09.g1)
ACCAG412546AG412547
length728727
length of high quality
(start - end)
244 (127 - 370)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no273_j09.b1 PHD_FILE: MSMg01no273_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005CHROMAT_FILE: MSMg01no273_j09.g1 PHD_FILE: MSMg01no273_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAA
TTCAATGAACTATTTCTCGGCACTTGAAAATCCATAGCTCTGATTGATCC
GTATTGATGTGGAGATCATGCAAGCTAAAACTAGACTTATGATTTGAATT
TGCCTGTGGCAGTGTATTAGTTATGGAAATTACCATAGCAGGCAATGGAA
AAATAAAAGGCTATTACTTCCGTTATCCCAATCCAAAAAGTATGTAGTGG
CTCATAGAACTCAAAGCCATGGTTGGCACTATGGGTAGCTTGGAACATTT
TAAGAATTTATCTTTCTCCTTCCTTTGAAAGAAATATATATAAAAACCCT
AGGTGGTCTCATTGTGATGTCAGAACGCAAGACCATTGGTCAAACACATC
AATACAACTATATGATTGTTTCAGAGACAGGCTCTCCCATACTTTGGGCT
AAACACATCAGAGAAAGAACCAGTAAATAACATTCCTCCATGGTCTCTGC
TTCAGTTCCTGCCTCCGGGTTCCTGCCTTGAGTTCCTGCTTTGATGTCTC
TCAGTGATGGGCAATAAGTTACCAGATGATCAATACCCTTTTCCTCCCAA
GCTGCATTTGGTGACATACCAGAATTTATAACTTTGGGGACATGTCTGGA
ACACTTTCTATTGAAACTTTGGCCTTACTTCAGGATCCCAGAGAGGGACT
TGATATGTTCCCAGTGTGGCCATATCGA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGTTCTAAAAATGCATACTTACAATTCTCT
AGATTTCCTTGGTATTTGTTATCATGTCCTTATTTTTAATCTAAATTGTT
TCTTAAATTGAATCTTCTCTCTCTGCCTTTTAGCTTTTGTCTAACCTTTT
GTCAATCTTATTGATTTTCTTAAAGAACTAACTCTTTGTTTCATTGATTC
TTTGTATTGTTTGTTTCTTTTTATTTCATTGATTTCAGCCCTGAGTTTAC
TTCTTGAATAAAGTATGTTGTTCCAGAGGCCATTGCATCTCTTGCCAGAT
GGTAATGTATTTTTTTATAGCACCACCCCCCACTAATTCATGAGATAATT
GATATTGCATGAAGTATCTAGGTTTCAAACCTGCTTCTTCGACACCTTTC
TATGAGAGTAGAGGGGTCGCTTAAATCTCCTCCTGAACTCATATGTAACA
AGAGAAGTTAGTTTAAGGAACTAAAAACAAGCAGGCAGTAGTTACTCTGG
GTGGAAATATATAGTGCCTGCAAGAACACATCCTGTGCATCTGGTAATGC
TGCCTCTTGCTCTGACCACTGCAATGAAAGTTCACTCTTGAACAGCATCA
GTCTACACATGGCTTCTTGGTCACTGTAATTGTGGTCTCTCTCTCTTTTA
AAACTCCAGTTTACATTAAAACCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_j09.b1 MSMg01no273_j09.b1 CHROMAT_FILE:
MSMg01no273_j09.b1 PHD_FILE: MSMg01no273_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:59 2005
         (244 letters)



>mm_chr19_53018717_53019360
          Length = 644

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaactagacttatgatttgaatttgcctgtggcagtgtattagttatggaaattaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaactagacttatgatttgaatttgcctgtggcagtgtattagttatggaaattaccat 382

                                                                       
Query: 61  agcaggcaatggaaaaataaaaggctattacttccgttatcccaatccaaaaagtatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaggcaatggaaaaataaaaggctattacttccgttatcccaatccaaaaagtatgta 322

                                                                       
Query: 121 gtggctcatagaactcaaagccatggttggcactatgggtagcttggaacattttaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gtggctcatagaactcaaagccatggttggcactatgggtagcttggaacattttaataa 262

                                                                       
Query: 181 tttatctttctccttcctttgaaagaaatatatataaaaaccctaggtggtctcattgtg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tttatctttctccttcctttgaaagaaacatatataaaaaccctaggtggtctcattgtg 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)