BAC Information

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BAC

Clone NameMSMg01-273N08
Chromosome19 (Build37)
Map Location 25,434,825 - 25,435,121
singlet/doubletsinglet
Overlap geneAnkrd15
Upstream genePip5k1b, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, LOC433233
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N08.T7 (MSMg01no273_n08.b1)MSMg01-273N08.TJ (MSMg01no273_n08.g1)
ACCAG412730AG412731
length737721
length of high quality
(start - end)
327 (39 - 365)293 (69 - 361)
definitionCHROMAT_FILE: MSMg01no273_n08.b1 PHD_FILE: MSMg01no273_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:17 2005CHROMAT_FILE: MSMg01no273_n08.g1 PHD_FILE: MSMg01no273_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GGAAGATCCCGAGATGCTTATGGACCTCATGTACAGGTAAATGCTCCCGG
GAAGACAGAGAGCATTGCGGTTAGGCGTGGCGGTGCAAACCTTCAGTCCC
AGCACTCAAGAGGAAGAGGCAGCTGAGTTCAAGGCCAGCCTGGTCCACAG
AGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAA
AGAAAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAA
AAGACATTTGTGATATTTGTGACCCCGCCACATTTGTCTAGGTGACACTG
CATCTTTTTTCTTTTTTTGTTAATTTTTTACTTTATTTATATGAATGTTT
TGTCGGCATATATATCTGTGTACCATGTTCCCCTGGAGGCCAGAAGAGGG
CATCAAATCCCCTGGGGCTAGAGTTGTAGATGGTTAGGAGCCAGCATGTG
GGTGCTGGAGCCAACCCAGGTCCTCCAGGAGAACAGACAGTGATCCTGAC
CACTGAGCCATCTCTCAAGGCCCAGTTGGAGTCTTTTCTGATGTTCTTAT
CTTACCTAAGATAGGTAGGACAGTCTTGCGGTAACATCCCACAATATACG
AGCCCCTAATGGGAAAACTGGTGTTTGGTTCCTTTTC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCTTTTCCACAGCTGACATTTTCACCATCGC
TGAGGCTAATTTTCCAGGCTGCAAGAATCCCTCGGTGGTGGCGGTGGTGA
AAGGAAGTTGATTTGGGCTTTTGCCAACAACTGCCAGAAACTGACATCAA
GATTCGGCACTCGTTTTTTACTAATTCGTTCGCACTCAGATGGGCGTGTA
AAAGTTTCCTCGAATGGAGCTTCCTCTCGGATGGATGGACAGTTGGGATG
AGGGTGAGAGCCGAGAACCCGCAACTTCACAAAGCACAGGGTCTAGGAGG
AAGGCTTTATTTTATCTCGCTCCCCCCCGGCGCTAATCCCAAAAGGGAAC
CATGAGTACTGAGAGACTGGGAGGCTGCTGGGCTTGGAACATCTCTGTCT
ACCCCCCACTATCCACATAAAAAGCCAGTCATGCCTGGCAAATCAGTGGG
GCTCCCTGGCCAGCTTGCCTAACTGAAAACCAGCAAGCTCCACGTGCATT
AAGAGACCCCTACCTCAAGTGAATAAAGCTCCAGCAGGGGCATGGTGGTA
CACAGCCTTAATCCCTGCAGATAACGGCAGGCGGATGTTTGTGAGTTCAG
GCCAGCTGGGTCTATAATTGAGTCCCAGAAAAACCCCACAATTTAAAGGG
GGGGTGGGGAGAGCAATGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n08.g1 MSMg01no273_n08.g1 CHROMAT_FILE:
MSMg01no273_n08.g1 PHD_FILE: MSMg01no273_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:17 2005
         (293 letters)



>mm_chr19_25434625_25435323
          Length = 699

 Score =  516 bits (267), Expect = e-151
 Identities = 287/297 (96%), Gaps = 6/297 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttttccacagctgacattttcaccatcgctgaggctaattttccaggctgcaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgcttttccacagctgacattttcaccatcgctgaggctaattttccaggctgcaagaat 438

                                                                       
Query: 61  ccctc------ggtggtggcggtggtgaaaggaagttgatttgggcttttgccaacaact 114
           |||||      |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccctcggtggtggtggtggtggtggtgaaaggaagttgatttgggcttttgccaacaact 378

                                                                       
Query: 115 gccagaaactgacatcaagattcggcactcgttttttactaattcgttcgcactcagatg 174
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 377 gccagaaactgacatcaagattcggcactcgatttttactaattcgttcacactcagatg 318

                                                                       
Query: 175 ggcgtgtaaaagtttcctcgaatggagcttcctctcggatggatggacagttgggatgag 234
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggcgtgtaaaagtgtcctcgaatggagcttcctctcggatggatggacagttgggatgag 258

                                                                    
Query: 235 ggtgagagccgagaacccgcaacttcacaaagcacagggtctaggaggaaggcttta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtgagagccgagaacccgcaacttcacaaagcacagggtctaggaggaaggcttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 699
Length adjustment: 9
Effective length of query: 284
Effective length of database: 690
Effective search space:   195960
Effective search space used:   195960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)