BAC Information

Click to search

BAC

Clone NameMSMg01-274J09
Chromosome19 (Build37)
Map Location 59,991,398 - 59,991,917
singlet/doubletsinglet
Overlap geneRab11fip2
Upstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneLOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274J09.T7 (MSMg01no274_j09.b1)MSMg01-274J09.TJ (MSMg01no274_j09.g1)
ACCAG413272AG413273
length736738
length of high quality
(start - end)
520 (69 - 588)303 (70 - 372)
definitionCHROMAT_FILE: MSMg01no274_j09.b1 PHD_FILE: MSMg01no274_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:09 2005CHROMAT_FILE: MSMg01no274_j09.g1 PHD_FILE: MSMg01no274_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGATCCGCGGAATTCT
GTGAGTGTTCCACTTTCAACACTTGCTCTAAGAATTTTGGGATGCCCTAC
CTCTCCATCCTGTGAACGAGGTTTTATCCCATAATGAAGTGAGGTTGAAT
CCAGAGTGCTTATGCTGGGGCTCCAGTGTTACAGTCAGCACTCACAAAGA
TTTGTCAAGAGAAACAGGCACAGGGCTGGCATCGCAGCTAGGACAGATCT
CAGAGCCAGATTCCACCAGTCAGCAGTGGAAGAATTTATAACTAATGTTA
TAATGTTACCTAACATCCTTTATATTTGAAATAAGGTTGTAGAGGATAGA
ATTTGGTACCACCTAATCCTCTTAATTGTCCTGAAAATTATTTTTGAAAA
AGTTTAGAAGAACACACCTCAAATGACCTGAGATTGTGCATTGGGAAGGC
TCTTCCTGCTCTTTGTTTTCTGCATTACTCTGTTCATTTTCTCTCTCCAC
AGCAGTCCTGTTTGGGGAATGTTTTTGACAGTATGGTTTTGCAGATGAAG
GAACCAAGATGTAGTCAAACTGACTTGTTAAAGGTCACGAAGCCGCAGAT
ACTACGGTAGAACACAGCGAATTCATCTCCCACAGCTGCAGGGTCCTTGA
CTCCTCTGCTCTTGAACACATTGTTGTCCTGACTCCCCTGCATGTAAATC
ATGTTACACATTCGACTGTCTCCCACTGTATGCGGG
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAAC
ACCTGAAAAAATGTTCACCCTCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGACTAAGACCAAAAA
TTCTGGTGACAGCAGATGCTGGCGTGGATGTTGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
TCCTCTCCTGTTTTTATATCCACCCCATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAACCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGAGGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACA
CATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_j09.b1 MSMg01no274_j09.b1 CHROMAT_FILE:
MSMg01no274_j09.b1 PHD_FILE: MSMg01no274_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:09 2005
         (520 letters)



>mm_chr19_59991198_59992117
          Length = 920

 Score =  998 bits (516), Expect = 0.0
 Identities = 519/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacttgctctaagaattttgggatgccctacctctccatcctgtgaacgaggttttatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 720 acacttgctctaagaattttgggatgccctacctctccatcctgtgaaggaggttttatc 661

                                                                       
Query: 61  ccataatgaagtgaggttgaatccagagtgcttatgctggggctccagtgttacagtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccataatgaagtgaggttgaatccagagtgcttatgctggggctccagtgttacagtcag 601

                                                                       
Query: 121 cactcacaaagatttgtcaagagaaacaggcacagggctggcatcgcagctaggacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cactcacaaagatttgtcaagagaaacaggcacagggctggcatcgcagctaggacagat 541

                                                                       
Query: 181 ctcagagccagattccaccagtcagcagtggaagaatttataactaatgttataatgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctcagagccagattccaccagtcagcagtggaagaatttataactaatgttataatgtta 481

                                                                       
Query: 241 cctaacatcctttatatttgaaataaggttgtagaggatagaatttggtaccacctaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cctaacatcctttatatttgaaataaggttgtagaggatagaatttggtaccacctaatc 421

                                                                       
Query: 301 ctcttaattgtcctgaaaattatttttgaaaaagtttagaagaacacacctcaaatgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcttaattgtcctgaaaattatttttgaaaaagtttagaagaacacacctcaaatgacc 361

                                                                       
Query: 361 tgagattgtgcattgggaaggctcttcctgctctttgttttctgcattactctgttcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgagattgtgcattgggaaggctcttcctgctctttgttttctgcattactctgttcatt 301

                                                                       
Query: 421 ttctctctccacagcagtcctgtttggggaatgtttttgacagtatggttttgcagatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttctctctccacagcagtcctgtttggggaatgtttttgacagtatggttttgcagatga 241

                                                   
Query: 481 aggaaccaagatgtagtcaaactgacttgttaaaggtcac 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggaaccaagatgtagtcaaactgacttgttaaaggtcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)