BAC Information

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BAC

Clone NameMSMg01-274P21
Chromosome19 (Build37)
Map Location 22,900,581 - 22,900,864
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneTmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274P21.T7 (MSMg01no274_p21.b1)MSMg01-274P21.TJ (MSMg01no274_p21.g1)
ACCAG413564AG413565
length734742
length of high quality
(start - end)
49 (251 - 299)295 (70 - 364)
definitionCHROMAT_FILE: MSMg01no274_p21.b1 PHD_FILE: MSMg01no274_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:38 2005CHROMAT_FILE: MSMg01no274_p21.g1 PHD_FILE: MSMg01no274_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCAAACGACTCACAAATTTCGAAGCCGACGGNANNCNNNGA
NGTTTGCGNGACGGAGANAACNNACAANANAAAAGNANCNGAGNACANNC
ANCCNGTTTTCCCCCGACAAGAGGGGANNGCCCGNGGNANANAANAANCA
NANGACNNNNGCNNCCAACANCAANCCNNCNCNCANNNAGAACGCAAGAC
AAAAAAAAAAGGCANNNNCCCCCCGGNNCCCAAAAANCCNACTTTTTATA
TAAACAGTTGTGGCACCAGAGGTGAATAGATAAGAGACAGGTGAACTGCA
CACACGACTTTTTTTTTTTTTAACNNNANAACGACCAANCACAGAGGNGN
NGGTATGACAACCACCCGCCACGTTAGGTAGAACTGCTTGCTGCCGGCTT
ATACTGAACAAAAAGGAAGTTCATCATCAGCCACCAGTGATGGAACCAAT
GTGAAAAGAAAACAGAACGGAAGTTTAGAACATCTCATCTTGTACGCTGC
CTACTCTTATTTCATTTTGCAATTTAGCCCTCGACTCTTGAAAACAGGGC
CGAAATCCTATGATGCCTGTTGGCATGCATAGTGTTGAAGCCCACTGGCT
CCCAGAGATCACGACTTTCTTTGGCGCCTGGAGACACCCATTCCCTCTCT
TTTTTTTTTATGACGTCTAAACCCCTCCCTGCCTAACAGATATTAAAATG
CTTTGACCCTCGCGTTTTTGCACTGCACTTCATG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGGAGATTGAGCCAGTCTGACAGAAAGAC
AGGCTCTGAAACTCAAGCACCCTGAAAAATACCCTGAGTTTTCCCTCCCT
GGAGACTCCAGGAAAGCTGAGGCTGGAAAGTCATCTTCCCTGGTGGTCCC
CGGGAGCATAGAAGGCGTGTGCTAGGGCTTTTAGAATGAGATCCTTGGGT
GGAACCAGATTTTCTTCTTTGAGACAGTTCTCACTACATAGCCCTTAGTG
TTTGTCTGGTTTTATTTGTTTGTTCTTTTTTTTTTTCTTTTTTTTTTTTT
GAGACAGTTCTTATTTATGTAGCCCACGCTAGCCTTGACTGACCTCAGGA
TGCCCCTGCCTCCCAACCTTCTAAGTGCTGGGACACCAGATGCCATCACC
ATACCAAGTGACATGGACATAATATTGTGATAATTAAAGAGCTTATCATC
CACTTCTTTTAGGAAGAAAATATTCTTCTAGTCCATTTTCCTAGGAGATT
GACTTGACCCCATCCAGCCTGAAGTCCCTGACGCTATGGCTGCTGGAATA
TGGCCTTAGCTCGTCTTTCAGAGATGCTCGTGATTGTAAGGAGCCAGTAA
TGCTGTCATTAGACTCCACTACCTGACAAAAATTGGGTCTTTCATTTTTC
TAGAGTGAATAAAAAATAACACCTGGTTCCTCCCTAGGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_p21.g1 MSMg01no274_p21.g1 CHROMAT_FILE:
MSMg01no274_p21.g1 PHD_FILE: MSMg01no274_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:38 2005
         (295 letters)



>mm_chr19_22900381_22901075
          Length = 695

 Score =  484 bits (250), Expect = e-141
 Identities = 278/292 (95%), Gaps = 8/292 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggagattgagccagtctgacagaaagacaggctctgaaactcaagcaccctgaaaaa 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcaggagattgagtcagtctgacagaaagacaggctctgaaactcaagcaacctgaaaaa 260

                                                                       
Query: 61  taccctgagttttccctccctggagactccaggaaagctgaggctggaaagtcatcttcc 120
           | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 261 tgccctgagttttccctccctggagactccaggaaaactgaggctgtaaagtcatcttcc 320

                                                                       
Query: 121 ctggtggtccccgggagcatagaaggcgtgtgctagggcttttagaatgagatccttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ctggtggtccccgggagcatagaaggcgtgtgctagggcttttagaacgagatccttggg 380

                                                                       
Query: 181 tggaaccagattttcttctttgagacagttctcactacatagcccttagtgtttgtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaaccagattttcttctttgagacagttctcactacatagcccttagtgtttgtctgg 440

                                                               
Query: 241 ttttatttgtttgttctttttttttttctttttttttttttgagacagttct 292
           |||||||||||||||||||||||||||        |||||||||||||||||
Sbjct: 441 ttttatttgtttgttcttttttttttt--------ttttttgagacagttct 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)