Query= MSMg01no275_f09.b1 MSMg01no275_f09.b1 CHROMAT_FILE:
MSMg01no275_f09.b1 PHD_FILE: MSMg01no275_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:03 2005
(293 letters)
>mm_chr19_49949025_49949717
Length = 693
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%)
Strand = Plus / Minus
Query: 1 gaaagacacaaatggaacatgggatgaaaggatcacgcgtagaacatttcttccaagaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 489 gaaagacacaaatggaacatgggatgaaaggatcacgcgtagaacatttctttcaagaaa 430
Query: 61 accaatgactctaattgaagcatctcacaatatttgatttgctttcgccctataaccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 accaatgactctaattgaagcatctcacaatatttgatttgctttcgccctataaccaaa 370
Query: 121 tgtttcaattaaactcatttgtattaacatgggctgagatcatttccaacactttgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtttcaattaaactcatttgtattaacatgggctgagatcatttccaacactttgttta 310
Query: 181 aattaccacaggcttcagcatggaatatcaaactcagacatcagaggacacagcctagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aattaccacaggcttcagcatggaatatcaaactcagacatcagaggacacagcctagac 250
Query: 241 tctgggcagcctgtggactgaacataacagagttctttatctttccctc 289
|||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 tctgggcagcttgtggactgaacacaacagagttctttatctttccctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no275_f09.g1 MSMg01no275_f09.g1 CHROMAT_FILE:
MSMg01no275_f09.g1 PHD_FILE: MSMg01no275_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:03 2005
(288 letters)
>mm_chr19_49814013_49814702
Length = 690
Score = 526 bits (272), Expect = e-154
Identities = 284/292 (97%), Gaps = 8/292 (2%)
Strand = Plus / Plus
Query: 1 ccacccctttgattgcatcccttcagctttgcaagcccataatccctcacagccatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacccctttgattgcatcccttcagctttgcaagcccataatccctcacagccatggtt 260
Query: 61 tctacactaataacagggggaacaactggttgttgtctgagcattttatatgctgcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacactaataacagggggaacaactggttgttgtctgagcattttatatgctgcttct 320
Query: 121 ctgcctgctatatttttaagttaattgtttaacttatttaatatttttgccaggccttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctgctatatttttaagttaattgtttaacttatttaatatttttgccaggccttgt 380
Query: 181 cattcacttctcatttccatcctcctctgtatctgggaagcacat-----ggctcctcct 235
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 381 cattcacttctcatttccatcctc---tgtatctgggaagcacatagataggctcctcct 437
Query: 236 ctttcggattcagctcgtttgttttacacaagggctctgcatggacgtttta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctttcggattcagctcgtttgttttacacaagggctctgcatggacgtttta 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space: 189999
Effective search space used: 189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
