Query= MSMg01no276_j12.b1 MSMg01no276_j12.b1 CHROMAT_FILE:
MSMg01no276_j12.b1 PHD_FILE: MSMg01no276_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:34 2005
(236 letters)
>mm_chr19_44838789_44839424
Length = 636
Score = 395 bits (204), Expect = e-114
Identities = 228/236 (96%)
Strand = Plus / Plus
Query: 1 gcctgagttcatagcattggggatgataggggacctctgtgttgctgttatcattggtac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gcctgagttcatagcattggggatgataggggacctctgtgttgctgttaccattggtac 260
Query: 61 atatatgtatatgtgtgtgtggttatgtgtatgtatgtatacatacatgtcccgagtaag 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 atatatgtatgtgtgtgtgtggttatgtgtatgtatgtatacatacatgtccagagtaag 320
Query: 121 ggtgcccagtagccagcatcggcaaggaaggaagtctacaacctgctcattcacctgagc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgcccaggagccagcatcggcaaggaaggaagtctacaacctgctcattcacctgagc 380
Query: 181 caaaggttttcatctcttcttctcccaaacagatgtcgtcgccgcacttgaaatat 236
|||||||||||||||| || || |||||||||||| ||||||||||||||||||||
Sbjct: 381 caaaggttttcatctcctcctcccccaaacagatgccgtcgccgcacttgaaatat 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_j12.g1 MSMg01no276_j12.g1 CHROMAT_FILE:
MSMg01no276_j12.g1 PHD_FILE: MSMg01no276_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:34 2005
(245 letters)
>mm_chr19_44995541_44996183
Length = 643
Score = 424 bits (219), Expect = e-123
Identities = 238/245 (97%), Gaps = 2/245 (0%)
Strand = Plus / Minus
Query: 1 tcatgaaattggttccttctttgtgacaccctcccccacctgggttcacgctgcttctac 60
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 443 tcatgaaattggttccttctttgtgacaccctcccccacctgggctcatgctgcttctac 384
Query: 61 acggggttccagaaattctgcatcctgagaactgtacctctctgtcagccttggtcacgg 120
|| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 383 acagggttccagaaattctgcatcctgagaactgtac--ctctgccagccttggtcacgg 326
Query: 121 gtactgggagggtaggtgtgggctatctgttggtcacagaacactgcagccatctagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtactgggagggtaggtgtgggctatctgttggtcacagaacactgcagccatctagttg 266
Query: 181 cacagtaattaagagggactcgttggcttgagcacatggttagagccaacagaactgaca 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 cacagtaattaagagggactcgttggcttgaacacatggttagagccaacagaactgaca 206
Query: 241 ggaag 245
|||||
Sbjct: 205 ggaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 643
Length adjustment: 9
Effective length of query: 236
Effective length of database: 634
Effective search space: 149624
Effective search space used: 149624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
