BAC Information

Click to search

BAC

Clone NameMSMg01-277B02
Chromosome19 (Build37)
Map Location 37,518,218 - 37,518,437
singlet/doubletsinglet
Overlap genenone
Upstream genePcgf5, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
Downstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277B02.T7 (MSMg01no277_b02.b1)MSMg01-277B02.TJ (MSMg01no277_b02.g1)
ACCAG415072AG415073
length721748
length of high quality
(start - end)
---220 (76 - 295)
definitionCHROMAT_FILE: MSMg01no277_b02.b1 PHD_FILE: MSMg01no277_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:08 2005CHROMAT_FILE: MSMg01no277_b02.g1 PHD_FILE: MSMg01no277_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACCCATCGTCAGGTCATAAACCTTACCCGCTGCGGCAGAAGTCGCGTG
GTGCGCTTGTGTTGTTTGCGCGGGGTGAGTGGTTGGGGTATGAAATATAG
CTCCTACAAATGAAGTGTTGTAGTATTATATCCATTTATTATTTTTCAGC
ACATTATATAATCAGACTAGGATAGCCGCGTAGAGTCTGCGGGGACTCTA
TGTCGCCGCGCATTTTGGTGTGGAGTTGACACGCCCGTCAAATTATCACT
GCCTTGTTTCTGCCGCCTCGTCCCGCACCTTTTATTATTGGTCTGTCTTT
TAATATAGTCTACCCACACCACAAAGCAACCCCAATGGGCCCAGGCGCGA
TATATATTNNNNNNGGGCGCCCCCTCTAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCGGAATTCCACAGTTTCTTA
ATATTTGTTAATCAAGNTATTGACTCCTCGCTGGGGGTACAAATGCCACC
AATTCCACTCTTGTTTAGCGGCTGGAATCTTCTAAAGTGGAAAAGGACCC
CCTTAAAAAATGAAAGGAACCCAATTTAAAAGGAAAGGGCCTTTAAAGGG
GTTTCTGGGACTTTCCCCAATTTGGCCGGGAAAAATTTTCGGGGGGCCTT
CTAAATTTTTAAAAAAAAGAAAAAATTTGGGGGGAAAAATCCCCAAAAAA
AACTCTTAAAAAAACCCGGGG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTCCAGCCCTTTGGGTAGCAC
TCATGAGTGGAGGCATCTGTACCCTGGAGCCTACTGAACGCCATTGCCAG
AATGTCCAGGATTCTCAGCTGCAGCCTGGAATCTTCTGAAGCAGGACACA
CACAAATCTCTCCAGGCTGAGCCGGCTGTGGGAAGGAGAAGTTGGAGCTG
GTGCTTCCTGTCTGCAGAGGATCATGACTTTGGAGCGTCCGTCAGCCACT
GGGNAGGTTTTCAAGGCTGCAGATGGTTTTCCTGTATAGCTCTTATCTTT
CTTTTTCTTTTCTAGGAGAAGGAGGAGGCCATGGATAATTTAGGGTGATT
TTTTTTTCCAGATTAAAACCTGTCAGGGTTGATTTCCATCATGGAAAGGT
TATATTCACTTGTGGATTTCCTAACCCTTCTTTAGGATTCCTTTTTAATG
TGAAAGAGTAGATTGCTGCCGCAAAAATAAAAACAAACAAATAAACTAAC
AAAAAAAAACCCTTAAGATAGGGAGAGAACCCNNNCCAGAAAAATTGCCA
CAGTATCCAGGGTCCCCCTCCCTGGCTTCTTAAGGACTGGAATGGAAAAA
GGCCCGGGGGGGTTTGTTGTTTTTTTTTTCNNTTGGTTTGGTTTTGGAGA
AGTGGTCNTTACTTTCTCTGCCTTCCCCCGGTTCCCGTCACTTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_b02.g1 MSMg01no277_b02.g1 CHROMAT_FILE:
MSMg01no277_b02.g1 PHD_FILE: MSMg01no277_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:08 2005
         (220 letters)



>mm_chr19_37518018_37518637
          Length = 620

 Score =  418 bits (216), Expect = e-121
 Identities = 219/220 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcctccagccctttgggtagcactcatgagtggaggcatctgtaccctggagcctact 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttgcctccagccctttgggtagcactcatgagtggaggcatctgtaccttggagcctact 260

                                                                       
Query: 61  gaacgccattgccagaatgtccaggattctcagctgcagcctggaatcttctgaagcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacgccattgccagaatgtccaggattctcagctgcagcctggaatcttctgaagcagg 320

                                                                       
Query: 121 acacacacaaatctctccaggctgagccggctgtgggaaggagaagttggagctggtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacacaaatctctccaggctgagccggctgtgggaaggagaagttggagctggtgct 380

                                                   
Query: 181 tcctgtctgcagaggatcatgactttggagcgtccgtcag 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgtctgcagaggatcatgactttggagcgtccgtcag 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)