BAC Information

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BAC

Clone NameMSMg01-277G08
Chromosome19 (Build37)
Map Location 5,042,354 - 5,042,587
singlet/doubletsinglet
Overlap geneBrms1
Upstream geneBC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1
Downstream geneRin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277G08.T7 (MSMg01no277_g08.b1)MSMg01-277G08.TJ (MSMg01no277_g08.g1)
ACCAG415310AG415311
length716700
length of high quality
(start - end)		88 (195 - 282)234 (108 - 341)
definitionCHROMAT_FILE: MSMg01no277_g08.b1 PHD_FILE: MSMg01no277_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:31 2005CHROMAT_FILE: MSMg01no277_g08.g1 PHD_FILE: MSMg01no277_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCCTCTCCCAGATTTCCAGGTGTGCTGGGAGCTGGAGTCAAAG
AGGATGCTATAAATATTGGACCGCTGTGGTTGCTAAAGGAACTTGGTGAG
CTTCTGTTACAGGGGGTGTATAAGTGGGTCCTTAGTAATAGGGTCCAAGC
ACAAGAGACTGCATTCATAGTTACTGCAGTTGCTTCCACTGCTGGAGTCT
GAGTGCCCTGGGTCTACAAATGGTAGGGGGGAAGGTAACTGGGGGTGGGG
GGAACATGAGTTTTTTGTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATTTTTTTTGTCCCCCCCCCCCCCCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCAGCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCCCAA
AAAATTCCCAAGGNCAACAAAGGAGGCAGGAGGAGAAACCTCTGCATATT
GATCGAAAATCCAAGAGTTAGGGTGGAAGGTATTTTCAGAAGGAAGGAGA
CAACGAGAGATTGATACTGCCAGGCCCCCAGAGAGAATAGGTCATCTTGG
ATGTAGATGCTTCTAGTTCACACTGGTGTGATTTCTACATCTCTGGTTGC
TGCTCTGTAAGTCTTTCCCATGGGGGAGGCATAACTCCATCCCCCAGGAA
GTTTTTTTTTTGTTTTGTTTTTTCGAGACAGGGTTTCTCTGGAGTGCCTT
CCCCCCCCTCGCCCTCACTCTGTAGACCAGGCTGGCCTCGAACTCNGAAA
TCAGAATACCTAAAGACTCCCTAGTGGTGGGATTAAAGGTTTCTTTGTTT
TTTATCTCATATTCTCCCAGTCTCATGTCCGACCACCCAGTGAAATGCGG
GTGTTTCATCAGGACAGGGCAGCAGGCTGTCCTACTCGCCCAGTGCAGTG
CCAGCTCACTTGATGACTGGGAATTTCTAAGCCCAAATTAAACAAAATAA
ACCTTTGCAGTATAGAAACTGGCTTTTCCTTCTTGGCAACCCTACTTGGA
GTACCGCTCCTTCTTTCCCATGCAACTAATTATAGCGTCGGAACTGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_g08.g1 MSMg01no277_g08.g1 CHROMAT_FILE:
MSMg01no277_g08.g1 PHD_FILE: MSMg01no277_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:31 2005
         (234 letters)



>mm_chr19_5042185_5042818
          Length = 634

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%), Gaps = 2/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccaagagttagggtggaaggtattttcagaaggaaggagacaacgagagattgatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aatccaagagttagggtggaaggtattttcagaaggaaggagacaacgagagattgatac 344

                                                                       
Query: 61  tgccaggcccccagagagaataggtcatcttggatgtagatgcttctagttcacactggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgccaggcccccagagagaataggtcatcttggatgtagatgcttctagttcacactggt 284

                                                                       
Query: 121 gtgatttctacatctctggttgctgctctgtaagtctttcccatgggggaggcataactc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 283 gtgatttctacatctctggttgctgctctgtaagtctttcccatggggaaggcataactc 224

                                                                  
Query: 181 catcccccaggaagttttttttttgttttgtttttt-cgagacagggtttctctg 234
           | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 223 cttcccccaggaagttttttttt-gttttgtttttttcgagacagggtttctctg 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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