XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTT
CAGACCTTTCCATGCCATTTTAAAATTCTCAAGAATTGGAAAGAAATCAA
AACCCAAAAGGTGTAAAAGTCCAGGTCAATGTACAAATGATAAAAATCTT
ATTCTGGTAATAATTGTAAAACACTTACAGATGAAATTCAAGCCACTATT
GCAGTTTATTGAATTACCTGCTTAATTTTCTCAACTTCACATCCTGATTA
CGACATTTCAGTTAGCAAGGATAACTGCAGAAACCAAAAGGCAGGATGAG
TACTTTTAGGGACTTTCTTGGAACTATGGACTGGATATTTGTTCCCATTT
TGGCAGGTTTCTTTTGCCTATGCCGCTACATCTTTAAGGTCAAAATGGTC
CCTCTAACACTCTGTGAATTGTGGTAAGGTCTGAAAGTCTTATTCCCCAA
TGGTTCTATGGTCATGAGTTAAGTACTGTACTCATCTTAGGGCAGATGAA
TATATCATCTCCTTATTACTAATAATTTAACAGTTTAAAGTAAATTTAAG
AGTAAATTAAGAGTAATTTAACAATTTGCTCTTTGCTTTACATAGTTAGG
TAGTCAGTTTTGCAGAGTTCTCTAGTGAAAACTAGAAGCAAAAAGTCCAG
CAATGGCCATAAATACAGGAGTTTACCAGCAAGACCAGGAGAGTAAGTAT
TGACAACAATTGTCATACTCTTGGTGTGTCTTTTCTTCTTATCTAAAGTT
T

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGATAATTTGCAGGCTAGTATGGACG
TATGCCCAGCTGAGATCCATGGCGCCACAGCTGAAGAGCAAGCTAAAACC
AGGGTAAGGCCAAGCCTTCGAAGAATACATACTGATTTATGGCATGCCTC
CTGCCCAATCCCCACTAGCAAGCAAGAAAAAATTACTCATCATACTTGTT
AAACTTATTAAGGCATGTATATATTTTTTAACCGAGAGGAATGTAGGGCA
GGTGTTAGGTATAGGGACCACTGTCTAAGTTTTGCAGCGGGGGAGAGAGA
TTGAACTCAACTTTTATTATGACCCGCCCCCACCTAAAACCAAGAAAAGG
TGGGACATGAGTGATGGCAAATTGCTAAGAGGAAACATCCAAGATGAATG
TTTTTTGACTATGATAATGTATTGTATGTATGTATGTATGCATGCATACN
TACATACNCAAATACACAAATATAACCTGCTGAATTTGTTTGCATGTGTA
TGGTTTCAGGGGTGACTACTTTGCATCATATATCCAGTTAGCATACTCAT
CCTCTGGAAAGTGACATTCTCCTCTCTGTTGTCTTCAGTTGCCCGCATTT
ATTTGCCTTCGCCCGGATCACTCATGCCTTTCCTCATCTATAGATGATTC
CATGTGTTATCTTATGTTGTGGCACTATCTTTAATATAATTTGTCTCCCT
CAG

Query= MSMg01no279_j21.b1 MSMg01no279_j21.b1 CHROMAT_FILE:
MSMg01no279_j21.b1 PHD_FILE: MSMg01no279_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:15 2005
         (298 letters)



>mm_chr19_15602386_15603083
          Length = 698

 Score =  545 bits (282), Expect = e-160
 Identities = 294/298 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggtcaaaatggtccctctaacactctgtgaattgtggtaaggtctgaaagtcttatt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggtcaaaatggtccctctcacactctgtgaattgtggtaaggtctgaaagtcttatt 260

                                                                       
Query: 61  ccccaatggttctatggtcatgagttaagtactgtactcatcttagggcagatgaatata 120
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ccccaatggttctatggtcacgagttaagtattgtactcatcttagggcagatgaatata 320

                                                                       
Query: 121 tcatctccttattactaataatttaacagtttaaagtaaatttaagagtaaattaagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatctccttattactaataatttaacagtttaaagtaaatttaagagtaaattaagagt 380

                                                                       
Query: 181 aatttaacaatttgctctttgctttacatagttaggtagtcagttttgcagagttctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aatttaacaatttgctctttgctttacatagttaggtagtcagttatgcagagttctcta 440

                                                                     
Query: 241 gtgaaaactagaagcaaaaagtccagcaatggccataaatacaggagtttaccagcaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaaaactagaagcaaaaagtccagcaatggccataaatacaggagtttaccagcaa 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_j21.g1 MSMg01no279_j21.g1 CHROMAT_FILE:
MSMg01no279_j21.g1 PHD_FILE: MSMg01no279_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:15 2005
         (294 letters)



>mm_chr19_15763289_15763982
          Length = 694

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgataatttgcaggctagtatggacgtatgcccagctgagatccatggcgccacagct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 351 tgtgataatttgcaggctagtatggacgtatgcccagctgagatccatggtgccacagct 292

                                                                       
Query: 61  gaagagcaagctaaaaccagggtaaggccaagccttcgaagaatacatactgatttatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gaagagcaagctaaaaccagggtaaggccaagccttcgaagaatacatactgatttatgg 232

                                                                       
Query: 121 catgcctcctgcccaatccccactagcaagcaagaaaaaattactcatcatacttgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 catgcctcctgcccaatccccactagcaagcaagaaaaaattactcatcatacttgttaa 172

                                                                       
Query: 181 acttattaaggcatgtatatattttttaaccgagaggaatgtagggcaggtgttaggtat 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acttattaaggcatgtatatactttttaaccgagaggaatgtagggcaggtgttaggtat 112

                                                               
Query: 241 agggaccactgtctaagttttgcagcgggggagagagattgaactcaacttt 292
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 111 agggaccactgtcaaagttttgcagcgggggagagagattgaactcaacttt 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)