BAC Information

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BAC

Clone NameMSMg01-280C12
Chromosome19 (Build37)
Map Location 59,133,850 - 59,134,135
singlet/doubletsinglet
Overlap gene4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280C12.T7 (MSMg01no280_c12.b1)MSMg01-280C12.TJ (MSMg01no280_c12.g1)
ACCAG417320AG417321
length742741
length of high quality
(start - end)
372 (371 - 742)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no280_c12.b1 PHD_FILE: MSMg01no280_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:56 2005CHROMAT_FILE: MSMg01no280_c12.g1 PHD_FILE: MSMg01no280_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAATGGCATCTAGAATGGCCAAGAAGCACTTAAAGAAATGT
TCAAAGTCCTTAGTTATTTTGGAACTGCAAATCAAAACAACTCTGAGCTT
CTACCTTACACCCGTCAGAATAGCTAAGATCAAACACTCAAGTTGGCACA
CACTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGCTGGTGCGA
GTGCAAGCTGGTACCACCACTCTGGAAATCAGTCTGGTGGTTGCTCAGAA
AATTGGGAAACAGTTCTACTTCAAGATCCAGCAATACCATTACAGAGCAT
GTACCCAAAAGATGTTTCACCATCCCACCAGGACACTTGCTCAACTATGT
TCATAGCAGTTTTATGAAACACCTCAGATGCCCCTCAATGGAAGAATGAA
TAAAGAAAACATGGTACATTTACACAATGGAATACTACCCAGCTATTAAA
AACCAGGAAATCATAAAATTTGCAGGCAAATAATTGAACTAGAAAATATC
ATCCTGAATGAGATAACCCAGACCCAGGAAGACATCCATGGTATGTACTC
ACTTATAAATGGATATCAGCCAGAAAATACAGGATAACCTTGCTACAATT
CAGAGACCCAAAGAAGCTAAGCAAACAGGAGAGCTCAAGGGAGGGTACTT
GAATCTCACTCAGAGGGGAAATAAAAAAGAAACTGGGCATGG
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGTAGTTTTTAAATAAGAACG
AGATTATGATTGCTATAATCATGATGCCTCATCTTTAAATTTCAGAACAG
GAGTTATAACAACAGTTAATAGTCACCTAAATAGTTGTAAAATCTGTAGT
ATATTCAGACTTAATTTATTGAGCTCTTAAAAATTACATTAGACTTTTTC
AGACATTAGTTTACCAATTGCCTGGGTATAGTTTGGCTGATGGTAGTAAT
GGTGAGTGCTTTAGCTCAGTTACTATTATATTTGTTTTTTAGAATGTTAC
TTTAAATCTAGTTTTTATGGCTCTCTTGCTCTCAACAATATTTATTTTAT
CTTAATTATATGTATGGGCGTATCTGTTATGTAGGTGTGTGGATATGAGT
GCAGGTACCAGAGGAGGCTAGTAGCTGCTCCACCCATGGTGTGTGCTGGG
AATGAACTTGGGTCCTCTATAAGAGCAGCAAGCACCTTCAAACACTGTGC
CACATCTGAGCCCTCCATTGTGCCTTGTCTCTGAAATGAGACGAGTGTCT
TCCTTCTTCTCTTCAACTACAGAGGGGATGGTGAGATGGGGGTAATTGGA
AAAAAAAATCCAAGTGGATAGGGAACTAATAACTTTCCTTCTTCAGCAAG
AAGATCATGGAGAATAGCTTGAAAGATTTCCAGATCTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_c12.g1 MSMg01no280_c12.g1 CHROMAT_FILE:
MSMg01no280_c12.g1 PHD_FILE: MSMg01no280_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:56 2005
         (292 letters)



>mm_chr19_59133645_59134336
          Length = 692

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   tagtttttaaataagaacgagattatgattgctataatcatgatgcctcatctttaaatt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tagtttttaaataagaacgagattatgattgctataatcatgatgcctcatctttaaatt 432

                                                                       
Query: 66  tcagaacaggagttataacaacagttaatagtcacctaaatagttgtaaaatctgtagta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcagaacaggagttataacaacagttaatagtcacctaaatagttgtaaaatctgtagta 372

                                                                       
Query: 126 tattcagacttaatttattgagctcttaaaaattacattagactttttcagacattagtt 185
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 371 tattcagacttaatttattgggctcttaagaattacattagactttttcagacattagtt 312

                                                                       
Query: 186 taccaattgcctgggtatagtttggctgatggtagtaatggtgagtgctttagctcagtt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 taccaattgcctgggtatagtttggctgatggtagtaatggtgagtgctttagctcagtt 252

                                                         
Query: 246 actattatatttgttttttagaatgttactttaaatctagttttta 291
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actattatatttgttttttagaatgttactttaaatctagttttta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)