Query= MSMg01no280_e09.b1 MSMg01no280_e09.b1 CHROMAT_FILE:
MSMg01no280_e09.b1 PHD_FILE: MSMg01no280_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:04 2005
(544 letters)
>mm_chr19_54516109_54517052
Length = 944
Score = 826 bits (427), Expect = 0.0
Identities = 506/543 (93%), Gaps = 21/543 (3%)
Strand = Plus / Plus
Query: 5 gaattcccttattttccatgacactgcaccagctacctgacaagagcatgaagtgaatca 64
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttattttctatgtcactgcaccagctacctgacaagagcatgaagtgaatca 264
Query: 65 acatatgttctcaactatgaaatgaaaaagaattttgatataagattcccattcagaagt 124
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatatgttctcaattgtgaaatgaaaaagaattttgatataagattcccattcagaagt 324
Query: 125 acagaaagaagaatgcatagggcataagaaacacaagtacatcgaacatgtcatacagcc 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagagagaagaatgcatagggcataagaaacacaagtacatcgaacatgtcatacagcc 384
Query: 185 tgactgccccatgatttgatttaaaagggtcagaaaggagaagcgggaagaggcagatgt 244
|||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 385 tgaccgccccatgatttgatttaacaggctcaggaaggagaagcgggaagaggcagatgt 444
Query: 245 taagagagggccaactttatgaacagtgatgagcattcggaagccgtaggttcaagactc 304
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 445 taagagagggccaactttatgaacagtgatgagcatccggaagctgtaggttcaagactc 504
Query: 305 tgtccttaaccagact-ggacacattaaaacaaaagcacgcacagccgcaggaagatgag 363
|||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tgtccttaaccaaa-taggacacattaaaacaaaagcaagcacagccgcaggaagatgag 563
Query: 364 gcgactgaagcc-----ccccccaggaggaatactaagaacaagagtaaaaatggctgag 418
|||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct: 564 gcgactgaagccaggggc-----aggaggaatactaagaacaagagtaaatttggctgag 618
Query: 419 tgtcacaggcctgagattttgccatttgagaggccaagataggaagatagcaagttcaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtcacaggcctgagattttgccatttgagaggccaagataggaagatagcaagttcaag 678
Query: 479 actatcctgtgctgcaaagttgagtttaaggatgcctgggcaattagtgaagctctgtct 538
||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 679 actatcctgtgctgcaaagttgagttt---------tgggcaattagtgaagctctgttt 729
Query: 539 aga 541
|||
Sbjct: 730 aga 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_e09.g1 MSMg01no280_e09.g1 CHROMAT_FILE:
MSMg01no280_e09.g1 PHD_FILE: MSMg01no280_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:04 2005
(300 letters)
>mm_chr19_54673760_54674457
Length = 698
Score = 420 bits (217), Expect = e-122
Identities = 279/309 (90%), Gaps = 17/309 (5%)
Strand = Plus / Minus
Query: 1 agagaacaacttacaggaactggttccctctttttatcatgtattttcccttaaggagtc 60
|||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||
Sbjct: 455 agagaacaacttacaggaactggttccctc--cttctcatgtagattcctttaaggagtc 398
Query: 61 agaataacaagtattttggatatgaaaaataaaataatgagctcatgaagtttttctcaa 120
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 397 agaataacaagtattttggatatgaaaaataaaataataagcccatgaagtttttctcaa 338
Query: 121 agttttaataaaatgtttaatatatttcatgcctagggaagaaaagattgtgaaagtttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgttttaataaaatgtttaatatatttcatgcctagggaagaaaagattgtgaaagtttt 278
Query: 181 aagttttcaaatttcatgtgatttgaacattaggagtttccgactccttttatacatatg 240
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 277 aagttttcaaatttcatgtgatttgaacattaggagtttccgactctttttatacacatg 218
Query: 241 ctctctcacacacacac--------------tcactcttgcacatgctcatcattgtttt 286
||| | ||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 217 ctcacacacacacacacacacacacacactctcactcttgcacatgctcagcattgtttt 158
Query: 287 gttttgttt 295
||||||||
Sbjct: 157 -ttttgttt 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 698
Length adjustment: 9
Effective length of query: 291
Effective length of database: 689
Effective search space: 200499
Effective search space used: 200499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
