BAC Information

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BAC

Clone NameMSMg01-288A18
Chromosome19 (Build37)
Map Location 10,094,230 - 10,094,839
singlet/doubletsinglet
Overlap geneRab3il1
Upstream geneAhnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1
Downstream geneFads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288A18.T7 (MSMg01no288_a18.b1)MSMg01-288A18.TJ (MSMg01no288_a18.g1)
ACCAG417979AG417980
length749754
length of high quality
(start - end)		673 (41 - 713)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no288_a18.b1 PHD_FILE: MSMg01no288_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:02 2005CHROMAT_FILE: MSMg01no288_a18.g1 PHD_FILE: MSMg01no288_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGTCAGCCTAATCTATATGGTAAGAACCTGTGTCCAAAATAAAGCAAA
CCAAAATGACGCTAAGGTTGGTTACACAGCCCAGCTGCCCGAGTCCTTGC
GCAGAGCACAAAGCTCTAGATTCCATTCTCAGCACTCCTAAGCCAGGCAT
TGTGGCACATGCCTGTCGTGCCAGTACTTGGGAGATGGAGAGAGGGACTC
ATCCTTGGCTAAATGGGGAGTTTGAGGCCAACCTAGGCTACATGAGACCC
TGTACCCACTTCCCCTACTCCAAAAATCAGACTCGTGTTGCCATTAATTC
AGAGTTCAAGGTTTACCCTCACAACGATCTCTACTCCTGGCTCCTACAGG
GCCCAGTCACTTCCGCTTATCGCCATTTAGGACTCTGCCATAAACAAAAC
ACCATAGCTCAGTTCAATTTACAGTAGGAAGCCAACCTCCAGAAACCTCA
GAATGGCCGGGCCCCAAGCTTTCCTGGGCTAGGATACATACCTCCTAGGA
TATACCTCTTAGAGCTGACATGACCCGGAGCATGGTCCCTCTCACCTTCT
GCAGGGAGTGGAGTGCTCCAAGGCCCCTAAGTCCCCAGGACATTCTAAAC
ACTCAGACTCGGATCCCTATGTCCAAGGGCTGGGAAGACGGCTCAGTGGG
TAAGAAGGCTCTCTGTAAGCCTGAGGACCCGAGTTCAGATCCCAGTGTG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAATTGAGGAATATCCAATGTCCAAGAA
GCACCTGAAGAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACTGGTCAGAATGGCTAAGATCAAA
AACTCAGGTGACAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAAGCTGGTACAATCACTCTGGAAATCAGTTT
GGTGGTTCCTCAGAAAATTAGACATAGTATTACCTGAGGACCCAGCTATA
CCACTCCTGGGAATATACTCACAACATGCTCCAACAAGGATACATGCTCC
ACTATGTTCATAGCACCCTTATTTATAATAGACAGAAGCTGGAAAGAACC
CAGATGTCCTTCAACAGAGGAATAGATACAGAAAAGGTGTTACATTTGCA
CAATGGAATACTACTCAGCTATTAAAAACAATGAATTCATGAAATTTTTA
GGCAAATGGATGGAACTAGAAAATATCATCCTGGGTTAGGTAACCCAATC
ACAAAAGAACACACATGATAGGCACTCACTGAGAAGTGAAGTGGATATTA
CACTAAAAGCTCGGAATATCCAAGATATAATTCACAGTCTACATGTAACT
AAGAAGAAGGAAGACCAAAGTATGGGTGCTTCAGTCCTTCTTAGAAGGGG
GGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_a18.b1 MSMg01no288_a18.b1 CHROMAT_FILE:
MSMg01no288_a18.b1 PHD_FILE: MSMg01no288_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:02 2005
         (673 letters)



>mm_chr19_10093767_10094839
          Length = 1073

 Score = 1118 bits (578), Expect = 0.0
 Identities = 602/610 (98%)
 Strand = Plus / Minus

                                                                        
Query: 64   aaatgacgctaaggttggttacacagcccagctgcccgagtccttgcgcagagcacaaag 123
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1073 aaatgacgctaaggttggttacacagccccgctgcccgagtccttgcgcagagcacaaag 1014

                                                                        
Query: 124  ctctagattccattctcagcactcctaagccaggcattgtggcacatgcctgtcgtgcca 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 ctctagattccattctcagcactcctaagccaggcattgtggcacatgcctgtcgtgcca 954

                                                                        
Query: 184  gtacttgggagatggagagagggactcatccttggctaaatggggagtttgaggccaacc 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  gtacttgggagatggagagagggactcatccttggctaaatggggagtttgaggccaacc 894

                                                                        
Query: 244  taggctacatgagaccctgtacccacttcccctactccaaaaatcagactcgtgttgcca 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  taggctacatgagaccctgtacccacttcccctactccaaaaatcagactcgtgttgcca 834

                                                                        
Query: 304  ttaattcagagttcaaggtttaccctcacaacgatctctactcctggctcctacagggcc 363
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 833  ttaattcagagttcaaggtttaccctcagaaggatctctactcctggctcctacagggcc 774

                                                                        
Query: 364  cagtcacttccgcttatcgccatttaggactctgccataaacaaaacaccatagctcagt 423
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  cagtcacttctgcttatcgccatttaggactctgccataaacaaaacaccatagctcagt 714

                                                                        
Query: 424  tcaatttacagtaggaagccaacctccagaaacctcagaatggccgggccccaagctttc 483
            |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 713  tcaatttacagtaggaagccaacctccagaaaccccagaatggccgggctccaagctttc 654

                                                                        
Query: 484  ctgggctaggatacatacctcctaggatatacctcttagagctgacatgacccggagcat 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  ctgggctaggatacatacctcctaggatatacctcttagagctgacatgacccggagcat 594

                                                                        
Query: 544  ggtccctctcaccttctgcagggagtggagtgctccaaggcccctaagtccccaggacat 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 593  ggtccctctcaccttctgcagggagtggagtgctccaaggcccctaagtccccagaacat 534

                                                                        
Query: 604  tctaaacactcagactcggatccctatgtccaagggctgggaagacggctcagtgggtaa 663
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  tctagacactcagactcggatccctatgtccaagggctgggaagacggctcagtgggtaa 474

                      
Query: 664  gaaggctctc 673
            ||||||||||
Sbjct: 473  gaaggctctc 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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