BAC Information

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BAC

Clone NameMSMg01-288G20
Chromosome19 (Build37)
Map Location 50,563,547 - 50,723,295
singlet/doubletdoublet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream geneLOC100042924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288G20.T7 (MSMg01no288_g20.b1)MSMg01-288G20.TJ (MSMg01no288_g20.g1)
ACCAG418257AG418258
length754751
length of high quality
(start - end)		325 (40 - 364)226 (435 - 660)
definitionCHROMAT_FILE: MSMg01no288_g20.b1 PHD_FILE: MSMg01no288_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:30 2005CHROMAT_FILE: MSMg01no288_g20.g1 PHD_FILE: MSMg01no288_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,563,547 - 50,563,863)(50,723,070 - 50,723,295)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCTCTGTGTAATGGTCAAAGCGTGAACTTGGAGCCCCCATGGGCTGATGA
GAGGATGAGTTTGTAATGGAACAAGCCTTGGTATCATGGTTAAGACTCAG
TTAATTCATTTAACCTTCATCATTTCTTATTAAGTACTCATTAATGACAT
CAGAGTCCCCTTTACTACCTGAATTCTATCATTAATTTGTTCAGCAGGTG
TGTCTCTTAAAACAATCTACATACTTTCTCAGCTACCCAAGAATTTCTTT
CTTTTGTCTGCCCACATTTCCTCCTTCCTCCATCAAGATAAGCTAGCTAG
CACAAAGCTATTTATTATATGTGACCTCCCCTTCCATGATTACACTCCAA
CTTCAAATGCATGTCACGCACAAGTTGTTCTTTTAAGGGAGGAAAGGAAA
GACCTTGAAAATTTCAATGCATACTCCTTTTATTCCCAACAACAAAATGC
TTGACTCTTTCAGTGTCTTTTGTTCCTTTTTATTCAATGTAACCCCTGGC
CTTCTAATGTCTACCAAAAGTCTTAGGGGTACTGACCACACTGTACTCTT
TGTTCTGCTAAGTGCTATCAGGAATGCCAAATACATACCTGCTCTCCTAA
CACAATCTAGCCTCCTGGAGCCCCCCAGGGCAGAGTTATGACATAGATGA
TTTACAGACTACGTGCATGCTTTAGCAGCAAGGATATAAGAAGAAAGGAA
CAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACAGGTGGTTTTCAAGTCTAGGATCTACCTAC
CTCAGTGAAAAGATACAAACGGAAGACTTCAAAACCAAGAGTGCTGAACT
GAATAGTTCCTTCTACAGCATTCTTCTGGCAGTCAAAATGATGGGATGCA
TTTAGGATAAGAGGAGTAATACCTCAACGTCCCCCAACTGTGGGCAGTAG
TTCAAGGCAAAGGACAAAGCTTAACTGTATAATGAGATGATACTTACATA
GGGGGATATGAGAAATGTGTTTTAAACTTAGTCCAGCAACAGAGCTGTTG
AGGATGTTTCCTCATTGACCCCCCCCCCCGCTTTAACAAACGAAATGTTT
GTGCCAGCCATCGACTCTGTCAGAGAAAAAAAGGCACAGAACTGTTATTT
AAAATACTGTTTTGGTTTTCATATTAAAGTGAGCCAGACTTTCTATGCTT
ACACTATTAATTTGCTAAGCCAGCCATTTACTTCATTGACAGTACGAAGA
TAAGGATCCAACTCAGCTAAGACTGAATTATGTTCACAATAAGTTTTTGT
AGCCTGGGATAATTGTATCCTGAGAGGCTCTGCCAGAGCCTGACCAATAC
AGAGGCAGATGCTTGCAGCCAACCATAGAACTGAGCACAGGGACCGCAAT
GGAGGAGTTAAGGAAAGGACTGAAGGAGCTGAAGGTGTTCGCCACCCCAT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_g20.b1 MSMg01no288_g20.b1 CHROMAT_FILE:
MSMg01no288_g20.b1 PHD_FILE: MSMg01no288_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:30 2005
         (325 letters)



>mm_chr19_50563343_50564067
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctctgtgtaatggtcaaagcgtgaacttggagcccccatgggctgatgagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctctgtgtaatggtcaaagcgtgaacttggagcccccatgggctgatgagag 264

                                                                       
Query: 65  gatgagtttgtaatggaacaagccttggtatcatggttaagactcagttaattcatttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgagtttgtaatggaacaagccttggtatcatggttaagactcagttaattcatttaa 324

                                                                       
Query: 125 ccttcatcatttcttattaagtactcattaatgacatcagagtcccctttactacctgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttcatcatttcttattaagtactcattaatgacatcagagtcccctttactacctgaa 384

                                                                       
Query: 185 ttctatcattaatttgttcagcaggtgtgtctcttaaaacaatctacatactttctcagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctatcattaatttgttcagcaggtgtgtctcttaaaacaatctacatactttctcagc 444

                                                                       
Query: 245 tacccaagaatttctttcttttgtctgcccacatttcctccttcctccatcaagataagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacccaagaatttctttcttttgtctgcccacatttcctccttcctccatcaagataagc 504

                            
Query: 305 tagctagcacaaagcta 321
           |||||||||||||||||
Sbjct: 505 tagctagcacaaagcta 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_g20.g1 MSMg01no288_g20.g1 CHROMAT_FILE:
MSMg01no288_g20.g1 PHD_FILE: MSMg01no288_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:30 2005
         (226 letters)



>mm_chr19_50722944_50723569
          Length = 626

 Score =  437 bits (226), Expect = e-127
 Identities = 226/226 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaactgttatttaaaatactgttttggttttcatattaaagtgagccagactttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cacagaactgttatttaaaatactgttttggttttcatattaaagtgagccagactttct 293

                                                                       
Query: 61  atgcttacactattaatttgctaagccagccatttacttcattgacagtacgaagataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atgcttacactattaatttgctaagccagccatttacttcattgacagtacgaagataag 233

                                                                       
Query: 121 gatccaactcagctaagactgaattatgttcacaataagtttttgtagcctgggataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gatccaactcagctaagactgaattatgttcacaataagtttttgtagcctgggataatt 173

                                                         
Query: 181 gtatcctgagaggctctgccagagcctgaccaatacagaggcagat 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gtatcctgagaggctctgccagagcctgaccaatacagaggcagat 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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