BAC Information

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BAC

Clone NameMSMg01-288M22
Chromosome19 (Build37)
Map Location 27,327,773 - 27,328,054
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr
Downstream geneLOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288M22.T7 (MSMg01no288_m22.b1)MSMg01-288M22.TJ (MSMg01no288_m22.g1)
ACCAG418533AG418534
length757758
length of high quality
(start - end)
282 (382 - 663)282 (437 - 718)
definitionCHROMAT_FILE: MSMg01no288_m22.b1 PHD_FILE: MSMg01no288_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:58 2005CHROMAT_FILE: MSMg01no288_m22.g1 PHD_FILE: MSMg01no288_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGNGACTGCGCGGAATTCCTA
AACCCATTGCATGACTCCCTCCTCAGCAACAGTTCTTTGCTAGGATTTTT
AAAGGGGTGACACTGACTCGAGAGAGTTACCTAACAAGATGGCAACAGAT
GACAAAGAGCAGCAATGGTTCTGTGGCTATCAAGGGCTCCTTCCTGAGGC
CCATCCCTCCCCTTTCTCCAACTCACCTGAACTCACAGGCATGAAGGCAA
CCAAATCAGAACTCTGGGAACAAGAACTTAAAGTGAATTTTTAAAAAAAG
CAATTCTGTGATACAAGACGGTTTTATGGTACCTGAAGCAAGAACAAAAG
CCAAGCTTAACTATTTTAAAACTCCATTTAAGTCTCTCCTAGTTTGTTTT
TCTGTTATTGTGACCCACACCATTACCAAAAAGCCACCTCCAGGGAAAAG
GAGCTAATTTAGGTTACAGTATGGATACAGACTATTATCAGGAGACCAGA
GCAGAAACAAGACTTGAAACAAGAGAGCATGGAGGGGCACTACTTACTGG
CTTGATCCTCCTGACTTGCTCAGCTCCCCGTCTTCTACAACCCAGGCTTA
CTTTTCTACTCAGCAGATAGGGTATTAGCCATAGGTATCTGGGTCCTCCT
ACATCAATCATCAGTCTTGATAATGCCCCTCTGACATGTCCACAGGCCAG
TCTGATGAATGTGATTGCTCAATTGAGATTCCTTCTTCCCAGGTAGATCT
AGGTTTC
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTGAGACAATGGTGTGATATAGCAGTTGCATC
CAAGAGCTCAGCACAGTGCCTGGCATCTGGTGTGCATGGGCACATGTACT
GACTATGACTGTCAGTGTGAGTTGTTATACAGCCCAGGAACTGGTAAGTG
CCCTCACCAGCGAGCATGGCAGGTAGCTTCACTCAGTGAGTAGCAAGGGC
ACTCATCTCTGAGGATCTCAATTCATACAGGTGAAAATCCTTAAAGGACT
CTATGATTTAAACTCTGGATTCTAAGCTAGTGTGTGTGTGTCTGTCTTTG
CTCCTGCTAAGACTTGTAAACCCCCCCCCCCCCCTCCAGAGTGTTTAAAT
GGCTATTGAAACCCCCCCCGCCCCTTACAATAACAACTATATGCTTAATA
GTGTGCTAAATAAGTGTTCTTCTGTCTTTTATTAGAGCTTCTCAGAAACC
CTAATAGGCAAGTATTATCTTGACTTTGCAGATGTGAAAGCTAAGACCAT
GAACCATGTGAGATTCCAAACCAAATAAGCTTGCTGCCATGGTCTAGGGT
GAGGGTGCTGTCCTGTGCAAATGTTAAGTTGGATATCACACTGTATATTT
GCTGAGTCTCTTTTCCTATAGGTTTGCAGAGCATGTCTGCAGTTTCTCTG
TTGTTATAGATTTCCTACCTAGCCAGGATGATGATGCACAGAACTCTAAA
GCCAGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_m22.g1 MSMg01no288_m22.g1 CHROMAT_FILE:
MSMg01no288_m22.g1 PHD_FILE: MSMg01no288_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:58 2005
         (282 letters)



>mm_chr19_27327573_27328254
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatatgcttaatagtgtgctaaataagtgttcttctgtcttttattagagcttctcaga 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ctatatgcttaatagtgtgctaaataagtgctcttctgtcttttattagagcttctcaga 260

                                                                       
Query: 61  aaccctaataggcaagtattatcttgactttgcagatgtgaaagctaagaccatgaacca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaccctaataggcaagtattatcttgattttgcagatgtgaaagctaagaccatgaacca 320

                                                                       
Query: 121 tgtgagattccaaaccaaataagcttgctgccatggtctagggtgagggtgctgtcctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgagattccaaaccaaataagcttgctgccatggtctagggtgagggtgctgtcctgt 380

                                                                       
Query: 181 gcaaatgttaagttggatatcacactgtatatttgctgagtctcttttcctataggtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaatgttaagttggatatcacactgtatatttgctgagtctcttttcctataggtttg 440

                                                     
Query: 241 cagagcatgtctgcagtttctctgttgttatagatttcctac 282
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 cagagcatgtctgcagtttctcggttgttatagatttcctac 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)