Query= MSMg01no288_n01.b1 MSMg01no288_n01.b1 CHROMAT_FILE:
MSMg01no288_n01.b1 PHD_FILE: MSMg01no288_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:59 2005
(683 letters)
>mm_chr19_55933729_55934813
Length = 1085
Score = 1239 bits (641), Expect = 0.0
Identities = 674/691 (97%), Gaps = 12/691 (1%)
Strand = Plus / Plus
Query: 5 gaattctctcctcactccagggatccatcttatggtttatcgacaccttcatctgtgaac 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctccccactccagggatccatcttatggtttatcgacaccttcatctgtgaac 264
Query: 65 agaagagccctacccatactagcgaaggcagtgcactttacccagaaccacctaggactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagagccctacccatactagcgaaggcagtgcactttacccagaaccacctaggactt 324
Query: 125 tcataaatctcgttttattttttcttatgtcagggattgaaactgaggccttgaacacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcataaatctcgttttattttttcttatgtcagggattgaaactgaggccttgaacacat 384
Query: 185 tagacatccattgagctacatctccagccaagaataatgtttgagcaaatatctggacgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagacatccattgagctacatctccagccaagaataatgtttgagcaaatatctggacgc 444
Query: 245 cttgtagtcctgtcaaacaaacatgtaaaactgactaaaggcacagaaccaacagaaggt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttgtagtcctgtcaaacaaacatgtaaaactgactaaaggcacagaaccaacagaaggt 504
Query: 305 acatgtagttatatagatgcgaaagaggatttgtacatggagttggctttcacagtcctg 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatgtagttatatagacgcgaaagaggatttgtacatggagttggctttcacagtcctg 564
Query: 365 aaggtgagcgcttttgtggagccagaagtaaagtgcaagccccattcttgcagcgtggtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggtgagcgcttttgtggagccagaagtaaagtgcaagccccattcttgcagcgtggtg 624
Query: 425 gatggattcagattctcgcagtagtgaacagctgtcagcccgtttcactctgatattatt 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 gatggattcagattctcgcagtagtgaacagctgtcagccagtttcactctgatattatt 684
Query: 485 ttatgcaaaatgtttctgaatgttttggtatttt-agggcttgttgttttgatttgtttg 543
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 685 ttatgcaaaatgtttctgaatgttttggtatttttagggctcgttgttttgatttgtttg 744
Query: 544 tttttaaaaactgttt-ccaactcttgtttttctgtgtttccgtgtgtgtgtgtgtgtgt 602
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttttaaaaactgttttccaactcttgtttttctgtgtttccgtgtgtgtgtgtgtgtgt 804
Query: 603 gtgtgtgtgtgtgtgtgtgt----------acacgtgtgcgtgttttaacttgctggctt 652
|||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 805 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatgtgcgtgttttaacttgctggctt 864
Query: 653 ccatcctatcacatgagtttgactatcaccc 683
|||||||||||||||||||||||||||||||
Sbjct: 865 ccatcctatcacatgagtttgactatcaccc 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1085
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1075
Effective search space: 723475
Effective search space used: 723475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_n01.g1 MSMg01no288_n01.g1 CHROMAT_FILE:
MSMg01no288_n01.g1 PHD_FILE: MSMg01no288_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:59 2005
(653 letters)
>mm_chr19_55959569_55960621
Length = 1053
Score = 1247 bits (645), Expect = 0.0
Identities = 651/653 (99%)
Strand = Plus / Minus
Query: 1 tccagatgctgtctcagagggtctgtgtacgcttctgctctgattgcatgaactcctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tccagatgctgtctcagagggtctgtgtacgcttctgctctgattgcatgaactcctgga 794
Query: 61 cacccaggagcttggcgttaaaactcaaacacacccattctgcacactttccttcaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 cacccaggagcttggcgttaaaactcaaacacacccattctgcacactttccttcaaaac 734
Query: 121 aaataatcagtgatttggaaacaaggaggctaagtttacatttctgtgtgagaagacgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaataatcagtgatttggaaacaaggaggctaagtttacatttctgtgtgagaagacgca 674
Query: 181 tgatattcttctaagtggtcaggagcagccgttacctgcagagttctgtacgtaataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgatattcttctaagtggtcaggagcagccgttacctgcagagttctgtacgtaataaaa 614
Query: 241 atatgcttatctagacctctacttatttggaaacctattttaggaaattacattttaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atatgcttatctagacctctacttatttggaaacctattttaggaaattacattttaccc 554
Query: 301 cctaataaaaggggtgaggcactcaaatgaatggagttcacataggaaaaagagatacct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 553 cctaataaaaggggtgaggcactcaaatgaatggagttcacataggaaaaagggatacct 494
Query: 361 aaaaagagccccttgggtttagagtgactatctaataatctcctccgtaacaattgaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaaagagccccttgggtttagagtgactatctaataatctcctccgtaacaattgaagg 434
Query: 421 gcatctgttgtcacttgcgtcttccttacacagggagtcactcgacagccaatggtctat 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 433 gcatctgttgtcacttgcgtcttccttacacagggaatcactcgacagccaatggtctat 374
Query: 481 gtttacttttctatcacactctggacagatttgaacatcctcggatagcgtagtgtatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtttacttttctatcacactctggacagatttgaacatcctcggatagcgtagtgtatct 314
Query: 541 gcacatatatggggaatattaattatgcataatctttaggctgcaagtcttcatattcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcacatatatggggaatattaattatgcataatctttaggctgcaagtcttcatattcag 254
Query: 601 ggcacacaaagccttatgatgtttttaacagttatgtgcagtaacccactgat 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggcacacaaagccttatgatgtttttaacagttatgtgcagtaacccactgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
