BAC Information

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BAC

Clone NameMSMg01-289I06
Chromosome19 (Build37)
Map Location 23,583,682 - 23,583,996
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm3, Klf9, Smc5, Mamdc2
Downstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289I06.T7 (MSMg01no289_i06.b1)MSMg01-289I06.TJ (MSMg01no289_i06.g1)
ACCAG419046AG419047
length747855
length of high quality
(start - end)
318 (45 - 362)127 (75 - 201)
definitionCHROMAT_FILE: MSMg01no289_i06.b1 PHD_FILE: MSMg01no289_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:50 2005CHROMAT_FILE: MSMg01no289_i06.g1 PHD_FILE: MSMg01no289_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGACTCTAGCATATTGTGAAACAGTATCTCCAGAACATGGCGTAGC
TATTTCACACACATCCTCACATCAGTGGTAGTTACAGGCATAAGACCTGC
ACAAGGCCACTCCTACCAATGTTCCATTATGGATGGGGGAGAGACGGTGA
TGACAGGATAATGGTGGTGGAGCATATGATCAAAATATATTGTATATGTA
CATGGAGTTATGAATATAGAGCAACAGTAAAAATTGAGCCTAGCTCAAGG
CTCCTTGTTTGTCTTCCTTGTAAGGTTGCTTTTTCTGGCATAGTTCATTC
CACACGCTGCCAATTTTTTGAACACCCGCCCCGCGGCACGCGTGGGTCAC
CATGGACCTCAGAACCCACCCACCTTCAAACTAAAACATCTTCCATGTCT
GAACTGCCCCCACGCTTCTAGCACTCATACAGTGTTAGCATTCATACAGC
TCTCCTGCTCCTCTGCAGTTTGGAACCCAAGGTGCTAGCAATGCAGATAC
AAGGGTGTCTCTGAGCTTTCCCTAATGAGTGATCCTAATGGAAACTCAGT
GTTCATTCCTTCCACAATTTACTGAATATCTGTCTTGCTCTGAGGGTTCT
AACCAGGGCTAAATTAGGGCGAAATTCGACTCTGTTATATAGCAGATATC
CCAATATGTCACCTGATATGTGTGTGCGTTTGCGTTCGATCGTGTCT
GTGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAACCTAAGATTTCGGAGCAAGTTCC
AGTTTGAGTTTGACATAATGTCACCTACTTCGATAAGTAGGAAAATTTAT
ATATACATATATATGCATTTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGN
NNNNNNNNNNNNCCNNNCCNCCCCCCCCCCCCCCCNCCCCCCCCCCCCCC
CCCCCCTCCCNCNCCNCCCCCCCCCTCCCTTTTTCCCTCCGCCTCCCCNN
CCCTTTCCCCCCCCNCCTTCTTTTTTTCCTTTTTTCCCCCCCCCNCCCCC
CCCCCCCCCTTTTTTTTCTTTTCCCCCCCCCCCCCCCCCCNNNNTNTCGT
TTCCTCCTTTCTCTTNTTTGTTTGCCTCCCCCCCAAAAAAAAAAAAAAAA
ATTNTTTGGGGGGCGGGGCGGCTTTCTCCCAACTAATATTTATCTTTCCC
GCCTATTTTATTTCTTTATTCTCCCCCTCCCCTCTTTTTCCTCTCCTTTT
CCTCGCACCTTCTTTTTGGTTATTCCGTATTTATACCCTTTATTTATTAT
ACCCATCGTTTAACATATACTTAACGCCCTCCTCTCCCATTTTGCGTGTC
AGAGTTCTTTAACATAATATTTGTCCTCCTATCTATCCGTCCTCGAAACC
TCTCTGCTTTCTCCTTATAACGGATAACGCCCTCAAATACCCCCATTTAT
TATTGTCTCAATATACCCTCCCCCTTCACCACGCTCTCTTTCCTCTCTAT
CTCACATTAAATCTTCCCCCCTTTTTATATTTTCTCCCTTTCTCCCCTCT
TTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_i06.b1 MSMg01no289_i06.b1 CHROMAT_FILE:
MSMg01no289_i06.b1 PHD_FILE: MSMg01no289_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:50 2005
         (318 letters)



>mm_chr19_23583331_23584048
          Length = 718

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagactctagcatattgtgaaacagtatctccagaacatggcgtagctatttca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggaattcagactctagcatattgtgaaacagtatctccagaacatggcgtagctatttca 607

                                                                       
Query: 64  cacacatcctcacatcagtggtagttacaggcataagacctgcacaaggccactcctacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cacacatcctcacatcagtggtagttacaggcataagacctgcacaaggccactcctacc 547

                                                                       
Query: 124 aatgttccattatggatgggggagagacggtgatgacaggataatggtggtggagcatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aatgttccattatggatgggggagagacggtgatgacaggataatggtggtggagcatat 487

                                                                       
Query: 184 gatcaaaatatattgtatatgtacatggagttatgaatatagagcaacagtaaaaattga 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 486 gatcaaaatatattgtatatgtgcatggagttatgaatatagagcaacagtaaaaattga 427

                                                                       
Query: 244 gcctagctcaaggctccttgtttgtcttccttgtaaggttgctttttctggcatagttca 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 426 gcctagctcaaggctccttgtttgttttccttgtaaggttgctttttctggcatagttca 367

                          
Query: 304 ttccacacgctgcca 318
           |||| || |||||||
Sbjct: 366 ttccgcatgctgcca 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)