BAC Information

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BAC

Clone NameMSMg01-290K20
Chromosome19 (Build37)
Map Location 33,302,380 - 33,302,669
singlet/doubletsinglet
Overlap gene6530404N21Rik
Upstream geneSgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K20.T7 (MSMg01no290_k20.b1)MSMg01-290K20.TJ (MSMg01no290_k20.g1)
ACCAG419890AG419891
length775760
length of high quality
(start - end)
510 (45 - 554)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no290_k20.b1 PHD_FILE: MSMg01no290_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:18 2005CHROMAT_FILE: MSMg01no290_k20.g1 PHD_FILE: MSMg01no290_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTGACTATCCGGGAACGTGACAATGGCTCCATTCCTAAAGGAAA
GTGTCTCACCAGAAGCTCTCAACTGCCAATATTTCCTTAACTAAGGCTGG
GTCTTCTAGAATTCTTCCCAAGTCATTGTTAGAAAACTTAACTGGCTACC
TGACTAATACAGAAGTGGATGCTCACAGCCATCCATTGGACTGAGCACAG
GGTCCCCAATGGAGGAACTAGAGAAAGGACCCAAGGAGCTGAAGGGTTTT
GCAGCCCCATAGGAGGATCAACAATATGAACCAACCAGTACCTCCCAGAG
CTCCCAGGGACTAAATCTCCAACACATGGAGGGACCTATGGCTCCAGCCA
CACATGTAGCAGAGGATTGCCTCGTGGGACATCAATGAGAGGAGAAGCTC
TTAGTCCTATGAAGGCTCAATGCCCCAGTGTAGGGGAATGCCACGACAGG
GAAACAGGAGTGGGTGGACTAGTGAGAAGGGGGAGAGGGGATATGATAGG
AGGGCTTTTGCCCCCTCACCCTTTCCCTTTTCTTTCTTTTTCCCCTTCTC
TCCCTTCTTTTCCCTTCCTCTTTCCCCTTTTTTTTCCCTTTTTTCTTTTC
CCTTCTTCTTCCCTCTCCCCCTTTTTTTGTTCCTTTCTTTCTTCCCTCTC
CCCTCTCCTTTTGTCCTATCTCTTTTTTCCTTCCATTTATCGTACCCCCT
AACCTATTCCCATTTTCTACCCGCG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTCCATGGGGAACAGTGACAGTC
AGTGAGTTCTGAGTCAACGCGTACACGGCAGTGCTGTGCGTGGTATGTTC
TCAGGGAGCCATCAAGCAGGTCAGAAGATGACAGTTCTATGGGAATGGAG
CTTAAGAGTCCTCGCTTTGTTCTACTATCCATGACTGTAGGAAGGCAGTT
TTCAGGGTTATTATAAAGCTGGAGATGAAGTGCTGATAATAAAACAGTAG
AAATCTACCACCACTCCCAGGTTTATTCATACTCACAAATACTCATCTGT
GTTCTGTGATCAATACTCTTCTAACTGCTGCCACCCTTCAGTTCCCTGTA
AGGGTTCTGAAAAGTCCCTTCTGGCCATTTTGTTTGTTGTGGGTTGGGTT
TGGGTTTGTTTTCAGTAGTTGATTGCTCCATGCAAGAAAAGTGTTTAGCA
TTTGTCTCTGCTGGTTTCCTTCATTGCTGTGTATTATAGCAAGCATCTTG
ACTACAATCTTTACTGTACTACAATGAAATTCATTGATAATATTACCAAG
GCAAACAGATATTCTCAGAATGATTGCTGTTATTTTGTCTACATTGTTCC
GAAATAAAGAGCGCATTCCCGTCTTGTGGCCTTGCTTTGAATTTCCGACT
TCCCAATGTCTTGTCTACAGTTTGTGCCTTCCCCAACCTTTCAATACCCT
CTGTGGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k20.g1 MSMg01no290_k20.g1 CHROMAT_FILE:
MSMg01no290_k20.g1 PHD_FILE: MSMg01no290_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:18 2005
         (291 letters)



>mm_chr19_33302052_33302742
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctccatggggaacagtgacagtcagtgagttctgagtcaacgcgtacacggcagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 618 atctccatggggaacagtgacagtcagtgagttctgagtcaacgcataca-ggcagtgct 560

                                                                       
Query: 61  gtgcgtggtatgttctcagggagccatcaagcaggtcagaagatgacagttctatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtgcgtggtatgttctcagggagccatcaagcaggtcagaagatgacagttctatgggaa 500

                                                                       
Query: 121 tggagcttaagagtcctcgctttgttctactatccatgactgtaggaaggcagttttcag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 tggagcttaagagtcctcgctttgttctactattcatgactgtaggaaggcagttttcag 440

                                                                       
Query: 181 ggttattataaagctggagatgaagtgctgataataaaacagtagaaatctaccaccact 240
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 439 ggttattataaagctggagatggagtgctgataataaaacagtagaaatccaccaccact 380

                                                              
Query: 241 cccaggtttattcatactcacaaatactcatctgtgttctgtgatcaatac 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccaggtttattcatactcacaaatactcatctgtgttctgtgatcaatac 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)