Query= MSMg01no290_o15.b1 MSMg01no290_o15.b1 CHROMAT_FILE:
MSMg01no290_o15.b1 PHD_FILE: MSMg01no290_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:35 2005
(691 letters)
>mm_chr19_16159012_16160102
Length = 1091
Score = 1278 bits (661), Expect = 0.0
Identities = 683/695 (98%), Gaps = 8/695 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcatcttccccaaacccaccatgccatctcgttaaaacccctctctgagccag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 197 gaattcagcatcttgcccaaacccaccatgccatctcgttaaaacccctctatgagccag 256
Query: 65 gcactggcacaagcctttcatgctagctcttgggagctgaggctggggctatgtgtgaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcactggcacaagcctttcatgctagctcttgggagctgaggctggggctatgtgtgaat 316
Query: 125 ttgagtggagcctagtctagtgagttcgaggacagccagggctacacagagaaaccctgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgagtggagcctagtctagtgagttcgaggacagccagggctacacagagaaaccctgt 376
Query: 185 cttcaaacaaa--------caaacaaacacctctctctgccaagcttatacattacccat 236
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttcaaacaaataaacaaacaaacaaacacctctctctgccaagcttatacattacccat 436
Query: 237 catgagcgctagccaaatatttaaccatttataacacattgtttccattttcttaattca 296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catgagcgctagccaaatagttaaccatttataacacattgtttccattttcttaattca 496
Query: 297 ttttaaatatccttttaatttttgtactacagattaaacccaggacctggtgtacactat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttttaaatatccttttaatttttgtactacagattaaacccaggacctggtgtacactat 556
Query: 357 tgagcaagccactgagctgtcctgccccgccttagacccccatctcagcctcccagatgc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgagcaagccactgagctgtcctgccccgccttagacccccatctcagcctcccagatgc 616
Query: 417 tgaggatacaggtatgaagtattgtgcccatccattttatttcttgataacaagctagca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgaggatacaggtatgaagtattgtgcccatccattttatttcttgataacaagctagca 676
Query: 477 tatgaacttccttcggctttgcactgtgtgtttgcgaaacttcaggcagttttcagtcgg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatgaacttccttcggctttgcactgtgtgtttgcgaaacttcaggcagttttcagtcgg 736
Query: 537 cttcctcatatcaactcacaaagtatgtttcctatgtaagttttcctacatggttttgtg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttcctcatatcaactcacaaagtatgtttcctatgtaagttttcctacatggttttgtg 796
Query: 597 agtactgctgcttctcggtgtctccaataggaacttggatagtccctctgaggcgtgaaa 656
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agcactgctgcttctcggtgtctccaataggaacttggatagtccctctgaggcgtgaaa 856
Query: 657 tcaaagcatgctgcagacacttaacaaaatgcaaa 691
|||||||||||||||||||||||||||||||||||
Sbjct: 857 tcaaagcatgctgcagacacttaacaaaatgcaaa 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_o15.g1 MSMg01no290_o15.g1 CHROMAT_FILE:
MSMg01no290_o15.g1 PHD_FILE: MSMg01no290_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:35 2005
(348 letters)
>mm_chr19_16320431_16321178
Length = 748
Score = 673 bits (348), Expect = 0.0
Identities = 348/348 (100%)
Strand = Plus / Minus
Query: 1 atcctacatacagaggaagaacaaaaagtaagtaagagatcatgtagaacacagaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atcctacatacagaggaagaacaaaaagtaagtaagagatcatgtagaacacagaggaat 489
Query: 61 atacaatgtctaagaatgtaaatcaggaaacacttacaaaattagaggaggaaaaaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atacaatgtctaagaatgtaaatcaggaaacacttacaaaattagaggaggaaaaaaagg 429
Query: 121 aaaacaaaaaggaaaaaggaaaggaaaaactcaccagaaaaacaaccaacaaaactacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaacaaaaaggaaaaaggaaaggaaaaactcaccagaaaaacaaccaacaaaactacac 369
Query: 181 gtattgcaacctctggctatagtcaccagatctgtagccagcattacactaagcactaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtattgcaacctctggctatagtcaccagatctgtagccagcattacactaagcactaca 309
Query: 241 agaaaacaaatggaagcacaatctttaagaaacaggacaagcatgtctaccctcgccatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaaacaaatggaagcacaatctttaagaaacaggacaagcatgtctaccctcgccatc 249
Query: 301 tcagagtcacacagagcttaaagccctagctaaagctataaagtctga 348
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcagagtcacacagagcttaaagccctagctaaagctataaagtctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
