BAC Information

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BAC

Clone NameMSMg01-292F11
Chromosome19 (Build37)
Map Location 14,370,710 - 14,370,983
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225, EG635497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292F11.T7 (MSMg01no292_f11.b1)MSMg01-292F11.TJ (MSMg01no292_f11.g1)
ACCAG421088AG421089
length834893
length of high quality
(start - end)
273 (46 - 318)226 (70 - 295)
definitionCHROMAT_FILE: MSMg01no292_f11.b1 PHD_FILE: MSMg01no292_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:23 2005CHROMAT_FILE: MSMg01no292_f11.g1 PHD_FILE: MSMg01no292_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGCCATCCCAGCTCTCTGTGGTTCTATGGCTGAAACTGACTCT
GTATAGGTCAGTTTTCTTTCCCCTAAAATGTGCTTTCTTTGTCAAATGAC
GATGAAGTCTTTAATCTTTTCTACAAAGTAAAGTTCTTTTTCTGTCTGTC
CAACTCACTTGTAAGACCCAGGTTTCTGGATAAGACCATATTTGGGAAAT
TTGATTAGGGTCCCCCTTCACATCTGAAGTTTATATAATCTAGTGACTTC
CTTTGAGAAAAGTAGTATCATGCTTGTGAGATGGGTGAGAGAGCTGGCTG
CCAATGCTGATTTATTATGGCCAACACACACCCTGAGATGGGTAAGAGAG
ATGTTTATTTGCCCCCCCCTTTCTGAAAAAAAAAAGATAATTTATCTATC
TTTTTGTTCCTACACTAATTATTCATTTCGATATAACCCTACTCCTACCA
GCTTGCCACTTTTGTGTTTCTTTTTCTTTTTTACTTACTATTTCCTTCCT
TTTCTATTTTTCTTTTTCCTACTTTTTTCTTATACTTACTTCTCTCTTCA
TTTCTTTTTTTTTATATATTTCCTCATCCCATTTTCGATCTTATCTCTTC
TTAACTTATCATCTTCCTACAAATCTTATACCCCCTCTTTCTTCTGTTTC
TCATACATCACCTTTTTCCACTCTTCCCTTCTTCCTTCCTTCCCACCCTA
ATTCTTCTTTTTACTATTTTTACCTATCCACTTTTACTTCTTTGTTCTAT
CATATATACTCTTTTCCTTCTATCCTACTCTATG
CGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCTGACTTGTGAGGTGAC
CTATAGAAGTATCGCGAAATCTTTGTTTAGCTCTGTACCCCATTTTTAAT
AGGATTATTTGATTTTTTCCAGTCCATCTTCTTGAGTTCTTTGTATATAT
TGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCTCAC
TCTGTTGGTGGCCATTTTGTCTTATTGACAGTGTCTTTTGCCTTATTTAT
TCTTTGAAATTTTATGAGGTCCCATTTGTTGATTCTTTTTTTTTTTTTTT
TCACCACACTATTTTGATCATTTCCGAGCAGCCCAGCGCAGGAGAGGGAG
AGGATTTTTTGATAATCTTCCCCCAAGCANCCCCCCAGAAAGAGATGGAG
GAGAAGGGAGAGAGAACCCCCCTCTTTTTTAAAAAAAAAAAAAAAATCTT
TTGTTGGGGGGGGGGTTTTTTTCTCTCCTTTTTATCTCCCTCTTTCCCTT
TTATTCTCTCTCGCTCCCCCCTATCTTCCGTATCTTTTTCTTCTATTTAT
TTTTGCTCTTCTCCCTATATTTTTATTCTCCCACTAGTCTTTTTCCTCTT
ATACACCTTCTCTCCCTCCTTTATTTCTCTACTTCCTCTCACGCGCCTTT
CGCGCTTTTTTTTTCCCTCCGATATCGCTCTTTTGTTCCTCCTTATTTAC
CTTTCTCCAAAAGCCTCGTCGCCTGATCTTCCATTTCGTTCTTCTTCTTT
TTATTCTCCCCTCTCCCTTTCTCCTCCCCTTGTGTTTGTTCTCTCCTCTT
TCTATTTTACCCTTTTCTGTCTTATTCTTGTTTCGCCACCCTCCTGCTCT
TTCTCTTCCCTTCTTTGTCCCTCATCCGCCTTATCCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_f11.b1 MSMg01no292_f11.b1 CHROMAT_FILE:
MSMg01no292_f11.b1 PHD_FILE: MSMg01no292_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:23 2005
         (273 letters)



>mm_chr19_14370506_14371183
          Length = 678

 Score =  491 bits (254), Expect = e-143
 Identities = 267/274 (97%), Gaps = 5/274 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccgccatcccagctctctgtggttctatggctgaaactgactctgtataggtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattctccgccatcccagctctctgtggttctatggctgaaactgactctgtataggtc 419

                                                                       
Query: 65  agttttctttcccctaaaatgtgctttctttgtcaaatgacgatgaagtctt-----taa 119
           |||||||||||||||||||||||||||||||||||||||| |||||||||||     |||
Sbjct: 418 agttttctttcccctaaaatgtgctttctttgtcaaatgatgatgaagtctttaaaataa 359

                                                                       
Query: 120 tcttttctacaaagtaaagttctttttctgtctgtccaactcacttgtaagacccaggtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcttttctacaaagtaaagttctttttctgtctgtccaactcacttgtaagacccaggtt 299

                                                                       
Query: 180 tctggataagaccatatttgggaaatttgattagggtcccccttcacatctgaagtttat 239
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 298 tctggataagaccatatttgggaaatttgattagggtcccctttcacatctgaagtttat 239

                                             
Query: 240 ataatctagtgacttcctttgagaaaagtagtat 273
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 ataatctagtgacttcctttgagaaaagtagtat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 678
Length adjustment: 9
Effective length of query: 264
Effective length of database: 669
Effective search space:   176616
Effective search space used:   176616
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)