BAC Information

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BAC

Clone NameMSMg01-292M18
Chromosome19 (Build37)
Map Location 8,000,466 - 8,000,643
singlet/doubletsinglet
Overlap geneAB056442
Upstream geneKcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903
Downstream geneLOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M18.T7 (MSMg01no292_m18.b1)MSMg01-292M18.TJ (MSMg01no292_m18.g1)
ACCAG421419AG421420
length763769
length of high quality
(start - end)
320 (46 - 365)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no292_m18.b1 PHD_FILE: MSMg01no292_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:58 2005CHROMAT_FILE: MSMg01no292_m18.g1 PHD_FILE: MSMg01no292_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGCCTGAGATTCACATACCAAGTCCCACTAGAAAAGAAGAAAT
GACCAACTCAGAGATTATAGCTACTCAGTGCCATTTGCTCTACGCCTTCA
CCATAAATCCTGATATTACTCTATAGCCCTATCTTACATGACCAACTCAG
AGATTATAGCTACTCAGTGCCATTTGCTCTAAGCCTTCACCATAAATCCT
GATATTACTCTATAGCCCTATCTTACACTTCAACATTCCTTTTGCATACA
ATATTATTTCTACTATCAGTTAAGATTACCTTTCTCTATAACCTTAATCA
AACTCTCTGTATCTTATGTTAATGCCCTGCCAACCATGCTACAAAGTTCT
CTCAAATAGGCCATAATGTGCCATCATCCTTAGAATAAAATACTAGAAGA
ATGAGAACTGTTTCACATTTAGTATAACAGTAATTAATGTTGTCTAAAAC
ACAAAGACTGAGCTAAATGAATATCTACTATTGTGCCCTTGGGACAGCAC
AATCATGAATTCATTGTGGGAATGACTTACCTCAGTCACAATGGTAGAAA
GGAAGTTGCTCCTGTCATACACCCAACCATCCACACAGGGGTCAGTGTCT
GGCTCTGTCACATTGGAGAAAGTGCCCTTCTTATGAAGAAAATGCCCCTG
TGGTTGGGCAAAACGACGACTTTTTCTGGGCTCAGGTTGGAATCCAAGGG
GAAGAAGATCCTC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACTCCATTTCT
TAATAGTGTTATTTGGTTTTCTGGATTCCGGCTTCTTGAGTTCTTAATAT
ATATTGGATATTAGTCCCCTATTGGATTTAGGACTGGTACTAAGTCTGTA
CCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTGAGGT
CAGGCATGGTGATTCTACCAGAGGTTCATTTATTGTTGAGAATAGTTTTT
GCTATCCTAGGTTTTTGTTATTCCACATGAATTTGCAAATTGCTCTTTAT
CTTTGCCAATTTGTTTTCTTGCCCCCCCCCCCCCCTTAATGTATCCTTTG
CCTTACAGAATATCCCCCCCCTTATGAAAAAAAATATGTCATTTCGGGAG
GGGTCAGCCCAAGTCTTTGCTGTGTGTACCATTGTTTGGGCTATTCCATG
TTTCAGGTCTTTCTGTTCCATTGGTGGTTATGTTGCCTTTGCTGCCGCTT
TGTGACCACATCCGTCGTTTCTTTCCTGTTCCCATATTCATTTTTTGTGT
TGTGTTTCCCCCCTGGTGTCATCTATTGTTATCTCTTGATCCCACGACCA
CGCCAGTTTTTTCGCTTCTTTCTTCTCCCACACACACTTGTATGCGACTT
CCTTTTGCGCCTTGCCACGTCCCTTTATCCTCATTTTTTTCTGTCTTTTT
TTTTCTCCCCCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m18.b1 MSMg01no292_m18.b1 CHROMAT_FILE:
MSMg01no292_m18.b1 PHD_FILE: MSMg01no292_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:58 2005
         (320 letters)



>mm_chr19_8000213_8000932
          Length = 720

 Score =  344 bits (178), Expect = 3e-99
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                       
Query: 143 atgaccaactcagagattatagctactcagtgccatttgctctaagccttcaccataaat 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atgaccaactcagagattatagctactcagtgccatttgctctaagccttcaccataaat 313

                                                                       
Query: 203 cctgatattactctatagccctatcttacacttcaacattccttttgcatacaatattat 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctgatattactctatagccctatcttacacttcaacattccttttgcatacaatattat 373

                                                                     
Query: 263 ttctactatcagttaagattacctttctctataaccttaatcaaactctctgtatctt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttctactatcagttaagattacctttctctataaccttaatcaaactctctgtatctt 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)